View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_27 (Length: 219)
Name: NF10955_low_27
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 12490491 - 12490676
Alignment:
| Q |
18 |
atcttccaccaacaaagagctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaac |
117 |
Q |
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| T |
12490491 |
atcttccaccaacaaagagctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaac |
12490590 |
T |
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| Q |
118 |
caaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
203 |
Q |
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| T |
12490591 |
caaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcccttcat |
12490676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 12505050 - 12505221
Alignment:
| Q |
32 |
aagagctcccactaaaacaaatcccaggcagctatggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaa |
131 |
Q |
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| T |
12505050 |
aagagcttccactaaaagaaatcccaggaacctatggcctccctttcatcggaccgattttggaccgacatgactttttctataaccaaggcagagacaa |
12505149 |
T |
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| Q |
132 |
attcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcctttcat |
203 |
Q |
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| T |
12505150 |
attcttctcaacaagaatacaaaaatacaattcaacagtcttcaaaaccaacatgccaccaggtccattcat |
12505221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 25732196 - 25732302
Alignment:
| Q |
98 |
gacacgactacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactcaacaatcttcagaaccaacatgccaccaggtcc |
197 |
Q |
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|||| ||||||||||||||||||||| | ||||||| |||| ||| |||||| ||||||||||||| || || ||| | |||||||||||||||| |
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| T |
25732196 |
gacatgactacttctacaaccaaggacgtgacaaatacttccaaaccagaatcgaaaaatacaactccactgtcctcaaactcaacatgccaccaggtgg |
25732295 |
T |
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| Q |
198 |
tttcatc |
204 |
Q |
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||||||| |
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| T |
25732296 |
tttcatc |
25732302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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