View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_3 (Length: 526)
Name: NF10955_low_3
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_3 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 1553316 - 1553813
Alignment:
| Q |
19 |
ctaaaagacttattgttgctgctgctgcttctgcaccaaagaagtcatggatccctggtgttagatttggtggaaacctcgtcgacccagaatggctcga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553316 |
ctaaaagacttattgttgctgctgctgcttctgcaccaaagaagtcatggatccctggtgttagatttggtggaaacctcgtcgacccagaatggctcga |
1553415 |
T |
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| Q |
119 |
tggatcgtaagtccactttcctctagaattaattataacttcgcaattcatagcttattgttcaatccatgttcatgtttacttataaacataaatcact |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553416 |
tggatcgtaagtccacttacctctagaattaattataacttcgcaattcatagcttattgttcaatccatgttcatgtttacttataaacataaatcact |
1553515 |
T |
|
| Q |
219 |
ttatattcaactcagttttcacttgttattgcggcagaataaaacgcacgcttagtttctttctgaattatgacttgtttaatgtttttcaattgtagac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553516 |
ttatattcaactcagttttcacttgttattgcggcagaataaaacccacgcttagtttctttctgaattatgacttgtttaatgtttttcaattgtagac |
1553615 |
T |
|
| Q |
319 |
taccaggtgactttggttttgatccactaggccttggcaaggacccagcatttctgaaatggtacagagaagctgagcttattcatggaaggtgggcaat |
418 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553616 |
taccaggtgactttggttttgacccactaggccttggcaaggacccagcatttctgaaatggtacagagaagctgagcttattcatggaaggtgggcaat |
1553715 |
T |
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| Q |
419 |
ggctgcagttctaggcatctttgttggtcaagcatggagtggagttccatggtttgaggctggagctgaccccaatgcaattgctccattctcctttg |
516 |
Q |
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| T |
1553716 |
ggctgcagttctaggcatctttgttggtcaagcatggagtggagttccatggtttgaggctggagctgaccccaatgcaattgctccattctcctttg |
1553813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 12110924 - 12110956
Alignment:
| Q |
205 |
aaacataaatcactttatattcaactcagtttt |
237 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
12110924 |
aaacataaatcactttatattcaactcactttt |
12110956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 15317 - 15285
Alignment:
| Q |
205 |
aaacataaatcactttatattcaactcagtttt |
237 |
Q |
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| T |
15317 |
aaacataaatcactttatattcaactcactttt |
15285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 38510410 - 38510378
Alignment:
| Q |
205 |
aaacataaatcactttatattcaactcagtttt |
237 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
38510410 |
aaacataaatcactttatattcaactcactttt |
38510378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 48045740 - 48045708
Alignment:
| Q |
205 |
aaacataaatcactttatattcaactcagtttt |
237 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
48045740 |
aaacataaatcactttatcttcaactcagtttt |
48045708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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