View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_5 (Length: 453)
Name: NF10955_low_5
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 35485148 - 35484739
Alignment:
| Q |
11 |
aagaaaacacgtgcttaaacgagatacgataacatctaaccgtcaatcagaaaccgaaaagcaaatgttggctaaaaggcgtgaattcgccctttcaagt |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
35485148 |
aagaaagcacgtgcttaaacgagatacgataacatctagccgtcaatcagaaaccgaaaagcaaatgttggctaaaaggtgtgaattcgccctttcaaat |
35485049 |
T |
|
| Q |
111 |
ctcatgcttgggagcttcaaactgacacgagataattggagcatggttgcagaaatcacgtcgactcaaaatagtnnnnnnnn-tctatacgtgagagaa |
209 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||| | |||||||||||||||| |
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| T |
35485048 |
ctcatgcttgggagcttcaaattgacacgagataattggagcatgattgtagaaatcacgtcacctcaaaatactaaaaaaaaatctatacgtgagagaa |
35484949 |
T |
|
| Q |
210 |
acaaatacaaataaagctatatctcgcatgtgcaaaccaaaatctcggggctcaccttgttttgggggctcatcagtcatcagaattgttgagggctggc |
309 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
35484948 |
acaaatacaactaaagctataactcgcatgtgcaaaccaaaatctcggggctcaccttgttttgggggctcgtcagtcatcagaattattgagggctggc |
35484849 |
T |
|
| Q |
310 |
catgggggctttgaaccggtataataaataatattgagtcgtaggtatcaccttatacaagtcggattccagctcgctcattatgctctccaaccccacc |
409 |
Q |
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| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35484848 |
cttaggggctttgaaccggtata----ataatattgagtcggaggtatcaccttatacaagtcggattccagctcgctcattatgctctccaaccccacc |
35484753 |
T |
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| Q |
410 |
caccatctataact |
423 |
Q |
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|||||||||||||| |
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| T |
35484752 |
caccatctataact |
35484739 |
T |
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