View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10955_low_6 (Length: 441)
Name: NF10955_low_6
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Original strand, 41890586 - 41890995
Alignment:
| Q |
15 |
agagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890586 |
agagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgta |
41890685 |
T |
|
| Q |
115 |
aaagctgaaacatttcaacaaagacctatcatgaagaaaataattcttctatctatactgcagaaaattagtttcgcctcgagttttgacatcttaccta |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890686 |
aaagctgaaacgtttcaacaaagacctatcatgaagaaaataattcttctatctatactgcagaaaattagtttcgcctcgagttttgacatcttaccta |
41890785 |
T |
|
| Q |
215 |
cataagcagatcgagctacaagtctaagcgctacaccgggagggaagttcaatcttcgcatcatcatcctctcaatcaaatcaaaaacaggcattgcata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890786 |
cataagcagatcgagctacaagtctaagcgctacaccgggagggaagttcaatcttcgcatcatcatcctctcaatcaaatcaaaaacaggcattgcata |
41890885 |
T |
|
| Q |
315 |
aacctataatatatttttaccccaccgatcagaaaagaaaatttaagatctgtttagtttctgaaaactttttctattttcacttttgttttcactttca |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890886 |
aacctataatatatttttacctcaccgatcagaaaagaaaatttaagatctgtttagtttctgaaaactttttctattttcacttttgttttcactttca |
41890985 |
T |
|
| Q |
415 |
atcacaaaaa |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
41890986 |
atcacaaaaa |
41890995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 361
Target Start/End: Original strand, 41896418 - 41896598
Alignment:
| Q |
181 |
attagtttcgcctcgagttttgacatcttacctacataagcagatcgagctacaagtctaagcgctacaccgggagggaagttcaatcttcgcatcatca |
280 |
Q |
| |
|
|||||||| | ||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| |
|
|
| T |
41896418 |
attagttttgactcaagttttgccatcttacctacataggcggatcgagctacaagtctaagcgctacactaggagggaagttcaatcgtcgaaccatcg |
41896517 |
T |
|
| Q |
281 |
tcctctcaatcaaatcaaaaacaggcattgcataaacctataatatatttttaccccaccgatcagaaaagaaaatttaag |
361 |
Q |
| |
|
||| ||||||||| || ||||||||||| |||||||||||||| ||||||| | ||| |||| ||||||||||||||| |
|
|
| T |
41896518 |
tcccctcaatcaagtcgaaaacaggcatggcataaacctataacatattttcgcgccattaatcaaaaaagaaaatttaag |
41896598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 41896198 - 41896319
Alignment:
| Q |
15 |
agagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgta |
114 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| ||||||||| |
|
|
| T |
41896198 |
agagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgta |
41896297 |
T |
|
| Q |
115 |
aaagctgaaacatttcaacaaa |
136 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
41896298 |
aaagctgaaacatatcaacaaa |
41896319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
22 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 22550866 - 22550823
Alignment:
| Q |
274 |
atcatcatcctctcaatcaaatcaaaaacaggcattgcataaac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22550866 |
atcatcatcctctcaatcaaatcaaaaacaggcatagcataaac |
22550823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
22 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
89 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| ||||| |||||||| ||| ||||||||||||| |
|
|
| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University