View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10955_low_7 (Length: 407)

Name: NF10955_low_7
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10955_low_7
NF10955_low_7
[»] scaffold0536 (5 HSPs)
scaffold0536 (217-399)||(6268-6450)
scaffold0536 (17-170)||(6497-6650)
scaffold0536 (17-135)||(10514-10632)
scaffold0536 (217-394)||(10257-10432)
scaffold0536 (261-343)||(1278-1360)
[»] chr4 (8 HSPs)
chr4 (17-170)||(48912331-48912484)
chr4 (217-380)||(48912121-48912284)
chr4 (19-170)||(48958186-48958337)
chr4 (21-170)||(48965373-48965519)
chr4 (217-378)||(48958384-48958545)
chr4 (40-170)||(48961356-48961486)
chr4 (217-399)||(48965566-48965748)
chr4 (220-254)||(48974349-48974383)
[»] chr6 (3 HSPs)
chr6 (217-380)||(12589945-12590108)
chr6 (217-380)||(12483240-12483403)
chr6 (36-136)||(12590192-12590292)
[»] chr2 (5 HSPs)
chr2 (17-170)||(13448403-13448553)
chr2 (217-375)||(13448600-13448758)
chr2 (17-170)||(13440240-13440390)
chr2 (19-170)||(13454876-13455024)
chr2 (300-376)||(13455154-13455230)
[»] chr7 (2 HSPs)
chr7 (218-330)||(3417356-3417468)
chr7 (21-170)||(3417516-3417662)
[»] chr8 (1 HSPs)
chr8 (17-170)||(12641467-12641620)
[»] chr5 (3 HSPs)
chr5 (217-330)||(28385571-28385684)
chr5 (45-128)||(12540753-12540836)
chr5 (81-166)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 217 - 399
Target Start/End: Complemental strand, 6450 - 6268
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6450 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 6351  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctgtgct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6350 acaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgct 6268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 6650 - 6497
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6650 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaat 6551  T
Q  117 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6550 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 10632 - 10514
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    ||||||| ||||| || |||||||||||||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| ||||    
T  10632 cactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaat 10533  T
Q  117 aatcaaacccttcttcttt 135  Q
    |||||||||||||||||||    
T  10532 aatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 394
Target Start/End: Complemental strand, 10432 - 10257
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    |||||||| ||||  |||| || |||||||||||||| ||  || |||||||| |||||||||||||| |  |||   |||| |||||||||||| ||||    
T  10432 ggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgt 10333  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctct 394  Q
    ||||||||||  ||||| ||||| |||  ||||||||||||||||| ||||||||||||||||| |||| ||| ||||    
T  10332 acaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctct 10257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 1360 - 1278
Alignment:
Q  261 tgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagttatctggcttcgagt 343  Q
    ||||||||| || | ||||||||| ||||||  ||| ||| |||||||||||||||| |  |||||||||||| |||| ||||    
T  1360 tgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 48912484 - 48912331
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||    
T  48912484 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat 48912385  T
Q  117 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    ||||| | ||||||||||||||||| |||||||||| || ||||||||||||||    
T  48912384 aatcatagccttcttctttccgataattctctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 48912284 - 48912121
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||    
T  48912284 ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgt 48912185  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 380  Q
    ||| ||| ||||||||| | |||||||  |||||||||| ||||||||||||||||||||||||    
T  48912184 acaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 48912121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 48958186 - 48958337
Alignment:
Q  19 ctaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataa 118  Q
    ||||||||||| |||||||| |||||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |    
T  48958186 ctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatga 48958285  T
Q  119 tcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    ||||||| ||||||||||| || ||||||||||||||||| || ||||||||    
T  48958286 tcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 48965373 - 48965519
Alignment:
Q  21 aacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatc 120  Q
    ||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || |||||||||||||||||||||    
T  48965373 aacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatc 48965472  T
Q  121 aaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    |||||   ||||||||| || ||||||||||||||||||||||| |||||    
T  48965473 aaacc---cttctttccaatgtttctctcttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 378
Target Start/End: Original strand, 48958384 - 48958545
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    |||||||||||||  |||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |  |||   |||| |||||||||||||||||    
T  48958384 ggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgt 48958483  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaaca 378  Q
    ||||||||||||||| |  |||| |||  ||||||||||||||  | |||||||| ||||||    
T  48958484 acaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaaca 48958545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 48961356 - 48961486
Alignment:
Q  40 ttccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccga 139  Q
    |||||||| ||||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | |    
T  48961356 ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaa 48961455  T
Q  140 tatttctctcttcgaatccctttggcaacca 170  Q
    | ||||||||||| ||||| || ||||||||    
T  48961456 tgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 399
Target Start/End: Original strand, 48965566 - 48965748
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    |||| ||||||||| || |  |||||||||||||||||  |||| |||||||| ||||| ||||||||| |  || | || | ||||||||||| |||||    
T  48965566 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgt 48965665  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctgtgct 399  Q
    ||||||||||||||| | |||| || |  |||||||||| |||||| ||||| |||||  |||| | ||||||||||| ||||    
T  48965666 acaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgct 48965748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 48974349 - 48974383
Alignment:
Q  220 acaacccatatgaatttgtgacccgatgcttctat 254  Q
    |||||||||||||||| ||||||||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctat 48974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 12590108 - 12589945
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    |||| |||||||| ||||| ||| || ||||||||||| ||||| | |||||| |||||||||||||| | ||||  ||||| ||| |||||||||||||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 380  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacact 12589945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 12483403 - 12483240
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    |||||||||||||||||||| | ||||||||||||||| || |||| ||| |||||||| |||||||| | ||||  ||||| ||| |||||||||||||    
T  12483403 ggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgt 12483304  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 380  Q
    |||||||||| || ||| |||| |||| |||||||||  ||||||| ||||| |||||||||||    
T  12483303 acaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacact 12483240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 12590292 - 12590192
Alignment:
Q  36 ggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 135  Q
    ||||||||| |||||||| ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  12590292 ggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttcttt 12590193  T
Q  136 c 136  Q
    |    
T  12590192 c 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 13448403 - 13448553
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    ||||||||||||| || || || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| ||||||||||||||    
T  13448403 cactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaat 13448502  T
Q  117 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
     |||||||||||||||   ||||||||||||||||| |||||||| || |||||    
T  13448503 gatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 375
Target Start/End: Original strand, 13448600 - 13448758
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    ||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||  |   | ||||||||| |||||||    
T  13448600 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 13448699  T
Q  317 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcaca 375  Q
    |||||||||||||| ||  ||  || || ||||||||||| | |||||||||| |||||    
T  13448700 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcaca 13448758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 13440240 - 13440390
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    ||||||||| ||| ||| | || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||||||||| ||||||||| ||||    
T  13440240 cactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaat 13440339  T
Q  117 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
     ||||||||| || ||   |  || |||||||||||||||||||||||||||||    
T  13440340 gatcaaacccatcctc---ctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 13454876 - 13455024
Alignment:
Q  19 ctaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataa 118  Q
    ||||||||||| ||  | || |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| |||||||||||||| |    
T  13454876 ctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatga 13454975  T
Q  119 tcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    |||||||||| ||||   |||| ||| ||||||| |||||||| ||||||||    
T  13454976 tcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 13455154 - 13455230
Alignment:
Q  300 gcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaa 376  Q
    ||||||||| ||||||||||| ||||||||| ||  ||| ||||| ||||| ||||| |||||||| ||| ||||||    
T  13455154 gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaa 13455230  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 3417468 - 3417356
Alignment:
Q  218 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 317  Q
    |||||||||||||||||  ||||||||||||||||||  |  |||||||||| || ||||||||||| | ||||  |  |||||||||||| ||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  318 caacactgagtta 330  Q
    |||||||||||||    
T  3417368 caacactgagtta 3417356  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 3417662 - 3417516
Alignment:
Q  21 aacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatc 120  Q
    |||||||||||||   || |||| ||||||||| ||||||||  | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  |||    
T  3417662 aacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatc 3417563  T
Q  121 aaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
    |||||||   ||||||| || |||||||| || |||||||| ||||||||    
T  3417562 aaaccct---tctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 12641620 - 12641467
Alignment:
Q  17 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 116  Q
    ||||||||||||| ||   ||| ||| |||| ||||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  |||||||    
T  12641620 cactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaat 12641521  T
Q  117 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 170  Q
     || ||||| ||||| ||| | | |||||||||||||||||| || ||||||||    
T  12641520 gataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaacca 12641467  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 28385571 - 28385684
Alignment:
Q  217 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 316  Q
    ||||||||||||||||||  |||||| ||||||||||   | ||||||||||| || ||||||||||| | |||| ||  || ||||||||| |||||||    
T  28385571 ggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgt 28385670  T
Q  317 acaacactgagtta 330  Q
    |||  |||||||||    
T  28385671 acacaactgagtta 28385684  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 12540753 - 12540836
Alignment:
Q  45 cccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaaccctt 128  Q
    ||||||||| ||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||    
T  12540753 cccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  81 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 166  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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