View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_8 (Length: 407)
Name: NF10955_low_8
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 37162618 - 37162236
Alignment:
| Q |
18 |
gttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatgg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162618 |
gttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatgg |
37162519 |
T |
|
| Q |
118 |
ccagtttgattgctacaaccgacttctttccatgcacaacattcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggcct |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162518 |
ccagtttgattgctacaaccgacttctttccatgcacaacattcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggcct |
37162419 |
T |
|
| Q |
218 |
tcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162418 |
tcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaag |
37162319 |
T |
|
| Q |
318 |
aaggccgaactgcaacagaacaaagattgctccaactaacttgagaatacatacatcactagtcatgatcttcatctctgctc |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37162318 |
aaagccgaactgcaacagaacaaagattgctccaactaacttgagaatacatacatcactagtcatgatcttcatctttgctc |
37162236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 37137034 - 37136791
Alignment:
| Q |
18 |
gttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatgg |
117 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||| |||| |||| ||||||||||||||||||||| || ||||||| |||| ||||||||||| |
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| T |
37137034 |
gttcaaatactttaaatgctgcaaatcaatcaatgatatgttaatctcacctcgaaaaggaccaaactgatcgccatttagatcaagcatttcaacatgg |
37136935 |
T |
|
| Q |
118 |
ccagtttgattgctacaaccgacttctttccatgc---acaacattcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctgg |
214 |
Q |
| |
|
||||||||||||||||| || | ||| |||||| |||||| ||||||||||| ||||| |||| |||||||| || ||| || | |||||||| | |
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| T |
37136934 |
ccagtttgattgctacatgtgattccttcccatgcacaacaacaatcactcttactatcccaggtaggcaaaaggtaagtatcttcgacgacaaggcttg |
37136835 |
T |
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| Q |
215 |
ccttcaactcaaggagagcatgtctctccttctctatacaacca |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37136834 |
ccttcaactcaaggagagcatgtctctccttctctatgcaacca |
37136791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 37144175 - 37143830
Alignment:
| Q |
19 |
ttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggc |
118 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||| |||||||||| ||| |||||||||||||| | |||||||||| ||| |||||||||| | |
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| T |
37144175 |
ttcaaatactttaaatgctgcaaattaatcaatgatgcgttgatcttgtctctaaaaggaccaaactaatcgccgtttagatcaagaatttcaacatgac |
37144076 |
T |
|
| Q |
119 |
cagtttgattgctacaaccgacttctttccatgcacaacat---tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggc |
215 |
Q |
| |
|
||||||||||||| || || | ||| |||||||||||| ||| |||||||||||||||||| |||||| || | || ||||| | ||| | |
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| T |
37144075 |
cagtttgattgctgcacgtgattccttcccatgcacaacaaccatcaatcttactgtcccaagtaggcaaaagagaagtgttatataacaccatgctttc |
37143976 |
T |
|
| Q |
216 |
cttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaa |
315 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | |||||||||||||| || | ||||| ||||||| || | ||||||||| ||||||||||||| |
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| T |
37143975 |
cttcagctcaaggagagcatgtctctcattctctttgcaaccaccagaaacggaagaaacattttttgcagcagctacagctccagaatagttggacaag |
37143876 |
T |
|
| Q |
316 |
agaaggccgaactgcaacagaacaaagattgctccaactaacttga |
361 |
Q |
| |
|
|||| | || ||||||| || ||||||||||||||||||||||| |
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|
| T |
37143875 |
agaatcgcaaattgcaacacaataaagattgctccaactaacttga |
37143830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 37129877 - 37129533
Alignment:
| Q |
19 |
ttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggc |
118 |
Q |
| |
|
|||||||||||||||| |||| || |||| |||| ||||||||||||||| ||||||| || |||| |||||||||| |||| |||||||||| | |
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| T |
37129877 |
ttcaaatactttaaattctgcaaatcaatcactgatctgttgatcttgcctctaaaaggaataacctgatcgccgtttagatcaagcatttcaacatgac |
37129778 |
T |
|
| Q |
119 |
cagtttgattgctacaaccgacttctttccatgcacaacat---tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggc |
215 |
Q |
| |
|
||||||||||||||||||| | | ||| ||||||||| || ||||| ||||||||||||| ||||||||||| ||||||||||||| ||| || |
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|
| T |
37129777 |
cagtttgattgctacaacctattccttcccatgcacagcaaccatcacttttactgtcccaagattgcaaaaggttagagtcatccaacacaaagcttgc |
37129678 |
T |
|
| Q |
216 |
cttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgtttt---gcatcaaccacagctccataatagttggac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||| || | ||| ||||| | |||||||| |
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| T |
37129677 |
cttcaactcaaggagagcatgtctctccttctgtatgcaa---------------gcaacatgttttgccgcaacagctacaactccagagtagttggag |
37129593 |
T |
|
| Q |
313 |
aaaagaaggccgaactgcaacagaacaaagattgctccaactaacttgagaatacataca |
372 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| |||||||||||||| | |||||||| |
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|
| T |
37129592 |
aaaagaaggtcgaactgcaacacaacaaagattgttccaactaacttgatagtacataca |
37129533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 72 - 267
Target Start/End: Complemental strand, 38745606 - 38745408
Alignment:
| Q |
72 |
aaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattca---ctctta |
168 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||| | | ||| |||||||||||| ||| |||||| |
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|
| T |
38745606 |
aaaaggaccaaactgatcactatttagatcaagtatttcaacatggccagtttgattcctacaaccaattccttcccatgcacaacaatcatcactctta |
38745507 |
T |
|
| Q |
169 |
ctgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaaca |
267 |
Q |
| |
|
||||||||| || ||||||| || |||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
38745506 |
gtgtcccaagaaggtaaaaggtaagtgtcatccaacacaagacctgacttcaactcaaggagagcatgtctctccttctctatgcaactaccagaaaca |
38745408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 35144809 - 35145142
Alignment:
| Q |
18 |
gttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatgg |
117 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| |||| ||||| | ||||||||||||||||||||| || |||| || |||| |||||||||| |
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|
| T |
35144809 |
gttcagatactttaaataccgcaactcgatcaaggatgcattgatttcacctcgaaaaggaccaaactgatcgccatttacatcaagcacttcaacatgg |
35144908 |
T |
|
| Q |
118 |
ccagtttgattgctacaaccgacttctttccatgcacaacattcactcttactgtcccaagtagacaaaaggttagca----tcatccaacacaaggctg |
213 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||| || |||||||| ||||| | |||||| |||| || | || ||| |||||||| |
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|
| T |
35144909 |
ccagtttgattgctacaaacgacccctttccattcacaacaatctctcttactctcccacgaagacaataggtaagtaagtgtcttccgccacaaggcca |
35145008 |
T |
|
| Q |
214 |
gccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggaca |
313 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| ||||| |||| |||||||||||| |||| ||| ||||| |||||||||||| |
|
|
| T |
35145009 |
gccttcaactgtaggagaccatgtctctccttctctatgcaacc----taaac-----caacatgttttg---caactacaactccacaatagttggaca |
35145096 |
T |
|
| Q |
314 |
aaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
359 |
Q |
| |
|
||||||| | |||||||||| ||| |||||| |||||||||||| |
|
|
| T |
35145097 |
aaagaagctctaactgcaacaatacatagattgttccaactaactt |
35145142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 38745398 - 38745356
Alignment:
| Q |
330 |
caacagaacaaagattgctccaactaacttgagaatacataca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
38745398 |
caacagaacaaagattgctccaactaactttagaagacataca |
38745356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 3025156 - 3025418
Alignment:
| Q |
18 |
gttcaaatactttaaatgtcgcaactccatcaatgatgtgttgatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatgg |
117 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||| | |||| |||||||||||||||| ||| ||||||| ||| ||||||||||| |
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| T |
3025156 |
gttcaaatactttaaatgccgcaactcgatcaatgtctcattgatgtcgcctacaaaaggaccaaactgatcaccatttagatcaagtatttcaacatgg |
3025255 |
T |
|
| Q |
118 |
ccagtttgattgctacaaccgacttctttccatgcacaacattca---ctcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctgg |
214 |
Q |
| |
|
||||||| |||||||||||| | | ||| |||||||||||| ||| |||||||||||||||| || ||||||| || | |||||||||||| | | |
|
|
| T |
3025256 |
ccagtttcattgctacaaccaattccttcccatgcacaacaatcatcactcttactgtcccaagaaggtaaaaggtaagtgttatccaacacaagacctg |
3025355 |
T |
|
| Q |
215 |
ccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacagaggcaacat |
277 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
3025356 |
acttcaactcaaggagtgcttgtctctccttctctatgcaactaccagaaacagaagcaacat |
3025418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 29723986 - 29724074
Alignment:
| Q |
271 |
gcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
359 |
Q |
| |
|
||||||||||| |||| | | | ||||||| || ||||||| || |||| | ||| |||||| |||||||||||||||||||||||| |
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|
| T |
29723986 |
gcaacatgtttggcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaactt |
29724074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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