View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10956_high_2 (Length: 711)

Name: NF10956_high_2
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10956_high_2
NF10956_high_2
[»] chr1 (1 HSPs)
chr1 (1-700)||(20222144-20222861)
[»] chr8 (1 HSPs)
chr8 (209-336)||(15005994-15006127)
[»] chr7 (2 HSPs)
chr7 (209-290)||(38818859-38818937)
chr7 (209-290)||(17933915-17933993)
[»] scaffold0002 (1 HSPs)
scaffold0002 (209-336)||(187922-188055)
[»] chr3 (1 HSPs)
chr3 (209-336)||(13224489-13224622)
[»] chr2 (1 HSPs)
chr2 (209-336)||(14465001-14465134)


Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Original strand, 20222144 - 20222861
Alignment:
Q  1 attgggcaatgatctgatagcgctttgtctaaagacaactgcttgcaatctggtcactctctaatccaagactccgaaataagaaatctgtcaatcctgc 100  Q
    ||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  20222144 attgggcaatgatcttatagctctttctctaaacacaactgcttgcaatctggtcactct--aatccaagactccgaaataagaaatctgtcaatcctgc 20222241  T
Q  101 tcttgatcaagtgtaccttcttccatgaagaggtaaatctatcaagtgtaccttcttcttgtgaatgtactccccaggcgg-atgcttagcgcgttagca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   | ||||||||||||||||||| |||||||| |||||||||    
T  20222242 tcttgatcaagtgtaccttcttccatgaagaggtaaatctatcacgtgtaccttctt---gcgaatgtactccccaggcgggatgcttagtgcgttagca 20222338  T
Q  200 atgtc---------gtcaatacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 290  Q
    ||  |         ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20222339 ataacattgcacgggtcgatacgcacagccgcctggtatccattgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 20222438  T
Q  291 tctcagggtcgaaccagcagagtgctttcgccattgatgttccttc-----------------aacgatccactggaataaaatcttctcttataaaatt 373  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||                 | || ||||||||||||||||||||||||||||||||    
T  20222439 tctcagggtcgaatcagcagagtgctttcgcctttgatgttccttccgatctctacggatttcatcgctccactggaataaaatcttctcttataaaatt 20222538  T
Q  374 ctttttcgtaattattttacacatttctcgaatagtactctcctattgaatgagcaaattcaagctatggtatcacaaataaatttaaacctacgagttt 473  Q
    ||||   |||||| ||||||||||| ||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20222539 cttta--gtaattgttttacacattactccaatagtactctctatttgaatgagcaaattcaagctatggtatcacaaataaatttaaacctacgagttt 20222636  T
Q  474 aaaagcagctttatacataaaatgtctacactattgtattacattgattacaaactcatcaaaatgagttcttaagttagaagaaaatgttgcaagtatc 573  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20222637 aaaagcagctttatacacaaaatgtctac--tattgtattacattgattacaaactcatcaaaatgagttcttaagttagaagaaaatgttgcaagtatc 20222734  T
Q  574 taagaccattgtcaataccaacatatctccaatcaacaacactcataatcccgacactcaccttcccaaccctcacttccccaccaccatcatcactttc 673  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20222735 taagaccatcgtcaataccaacatacctccaatcaacaacactcataatcccaacactcaccttcccaaccctcacttccccaccaccatcatcactttc 20222834  T
Q  674 tctacaaccgcacatccccaccttcat 700  Q
    |||||||||||||||||||||||||||    
T  20222835 tctacaaccgcacatccccaccttcat 20222861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 15005994 - 15006127
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc-tctc--------agggt 299  Q
    |||||||||||||||| |||||||||||||  |||||||   |||||| ||||||||||||||||||||||||||||||||| ||||        || ||    
T  15005994 atacacacagccgcctagtatccatcgtttacggctagg---actactagggtctctaatcccattcgctcccctagctttcgtctctcagtgttagtgt 15006090  T
Q  300 cgaaccagcagagtgctttcgccattgatgttccttc 336  Q
    ||  ||||||||||||||||||||||| |||||||||    
T  15006091 cggcccagcagagtgctttcgccattggtgttccttc 15006127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 38818859 - 38818937
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 290  Q
    |||| ||||||||||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||    
T  38818859 atacgcacagccgcctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttc 38818937  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 17933993 - 17933915
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 290  Q
    |||| ||||||||||| |||||||||||||  |||||||   |||||||||||||| |||||||||||||||||||||||||    
T  17933993 atacgcacagccgcctagtatccatcgtttacggctagg---actactggggtctcgaatcccattcgctcccctagctttc 17933915  T

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Target: scaffold0002 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 187922 - 188055
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc---------tctcagggt 299  Q
    |||| ||||||| ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||         | |||| ||    
T  187922 atacgcacagccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgt 188018  T
Q  300 cgaaccagcagagtgctttcgccattgatgttccttc 336  Q
    ||  ||||||||||||||||||||||| |||||||||    
T  188019 cggcccagcagagtgctttcgccattggtgttccttc 188055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 13224489 - 13224622
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc---------tctcagggt 299  Q
    |||| ||||||| ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||         | |||| ||    
T  13224489 atacgcacagccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgt 13224585  T
Q  300 cgaaccagcagagtgctttcgccattgatgttccttc 336  Q
    ||  ||||||||||||||||||||||| |||||||||    
T  13224586 cggcccagcagagtgctttcgccattggtgttccttc 13224622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 14465001 - 14465134
Alignment:
Q  209 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc---------tctcagggt 299  Q
    |||| |||| || ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||         | |||| ||    
T  14465001 atacgcacaaccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgt 14465097  T
Q  300 cgaaccagcagagtgctttcgccattgatgttccttc 336  Q
    ||  ||||||||||||||||||||||| |||||||||    
T  14465098 cggcccagcagagtgctttcgccattggtgttccttc 14465134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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