View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_high_4 (Length: 502)
Name: NF10956_high_4
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Complemental strand, 23244769 - 23244287
Alignment:
| Q |
17 |
tgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggtagaagttgaaaatgtt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23244769 |
tgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggtagaagttgaaaatgtt |
23244670 |
T |
|
| Q |
117 |
gtcccctaacatcaattgaatctccttcaccatttttcaagaatctttcaggacgaaactctaatgggtttttccataattttggatttctcccaatgga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23244669 |
gtcccctaacatcaattgaatctccttcaccatttttcaagaatctttcaggacgaaactctaatgggtttttccataattttggatttctcc-aatgga |
23244571 |
T |
|
| Q |
217 |
ccaaacattgacaaagagtaatgtgttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtga |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23244570 |
ccaaacattgacaaagagtaatgtgttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtga |
23244471 |
T |
|
| Q |
317 |
agacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23244470 |
agacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttctt |
23244371 |
T |
|
| Q |
417 |
cacgagctttttggagtaaagatgggt--ttttatgagttctactaatgcccattctgttgatattgttgttgtctctgctcct |
498 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
23244370 |
cacgagctttttggagtaaagatgggtttttttatgagttctactaatgcccattctgttgatattgctgttgtatctgttcct |
23244287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 34754548 - 34754627
Alignment:
| Q |
68 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
147 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||| |||||||||| || ||||||| |
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| T |
34754548 |
ccaggacacattctccttccggacccaaatggtagaagttggaaatgctgacccctaagatcaattgaagctgcttcacc |
34754627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 34762527 - 34762606
Alignment:
| Q |
68 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
147 |
Q |
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| T |
34762527 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
34762606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 34781661 - 34781582
Alignment:
| Q |
68 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
147 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || ||||||| |
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| T |
34781661 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
34781582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 242 - 498
Target Start/End: Original strand, 9381425 - 9381682
Alignment:
| Q |
242 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
341 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||| | ||||||||||| || |||||||| || |||||||| ||||||||||||||| |||| || | |
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| T |
9381425 |
ttttctgggatcacataattttcaattttacattgcgtgacacatcttctagtgaccatagggacgggtgggtgtagacgaaatgtttcttttattatgg |
9381524 |
T |
|
| Q |
342 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
441 |
Q |
| |
|
|||| | ||| || | ||||| | ||| ||||| || ||| ||| ||||| |||||||| ||||| |||||||||||||||||||| | ||| || || |
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| T |
9381525 |
cttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtctatttcttcacgagctttttgtaataatgaagg |
9381624 |
T |
|
| Q |
442 |
gtt-tttatgagttctactaatgcccattctgttgatattgttgttgtctctgctcct |
498 |
Q |
| |
|
||| || || || || |||||||||||||||||||| |||| |||||| |||| |||| |
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| T |
9381625 |
gttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcct |
9381682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 242 - 498
Target Start/End: Original strand, 9398850 - 9399107
Alignment:
| Q |
242 |
ttttctgggatcacatagttttcaactttgcattctgctacacatcttcttgtaaccataggaactggtgggtgaagacgaaatgtttctcttatgattg |
341 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||||||||| |||| || | |
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|
| T |
9398850 |
ttttctgggatcacataattttcaattttgcattgcgtgacacatcttctagtgaccataggaaccggtgggtgtagacgaaatgtttcttttattatgg |
9398949 |
T |
|
| Q |
342 |
cttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcgatttcttcacgagctttttggagtaaagatgg |
441 |
Q |
| |
|
|||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |||||||||||||||||||| | || || || |
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|
| T |
9398950 |
cttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtctatttcttcacgagctttttgtaacaatgaagg |
9399049 |
T |
|
| Q |
442 |
gtt-tttatgagttctactaatgcccattctgttgatattgttgttgtctctgctcct |
498 |
Q |
| |
|
||| || || || || |||||||||||||||||||| |||| |||||| |||| |||| |
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| T |
9399050 |
gttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcct |
9399107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 9381194 - 9381309
Alignment:
| Q |
17 |
tgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggtagaagttgaaaatgtt |
116 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| ||||||||||| | || ||||||| || |
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|
| T |
9381194 |
tgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcctgacccaaatggcaaaatctgaaaatttt |
9381293 |
T |
|
| Q |
117 |
gtcccctaacatcaat |
132 |
Q |
| |
|
||||||| || ||||| |
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|
| T |
9381294 |
gtcccctcacgtcaat |
9381309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 9398619 - 9398734
Alignment:
| Q |
17 |
tgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagacccaaatggtagaagttgaaaatgtt |
116 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| ||||||||||| | || ||||||| || |
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|
| T |
9398619 |
tgaattatggcaccaagcaaagctggaacttcttgcattgctaaagtaaccccaggacacatccttcttcctgacccaaatggcaaaatctgaaaatttt |
9398718 |
T |
|
| Q |
117 |
gtcccctaacatcaat |
132 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
9398719 |
gccccctcacatcaat |
9398734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 18104072 - 18104008
Alignment:
| Q |
67 |
accaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaa |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||| |
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|
| T |
18104072 |
accaggacaaattcttcttccagacccaaatggaataagctcaaaatgatgtcctttaacatcaa |
18104008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 18094063 - 18093998
Alignment:
| Q |
68 |
ccaggacacattcttcttccagacccaaatggtagaagttgaaaatgttgtcccctaacatcaatt |
133 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| | |||||| ||||| ||||||||||| |
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|
| T |
18094063 |
ccaggacaaattcttctaccagacccaaatggaataagctcaaaatgatgtcctttaacatcaatt |
18093998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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