View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_high_7 (Length: 419)
Name: NF10956_high_7
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 172 - 405
Target Start/End: Original strand, 27762862 - 27763095
Alignment:
| Q |
172 |
gttcattggcataagggtgtgacagcatctacgaaattaggaagggaagaaaccaaagcatatcaaagaaggtgtaaggnnnnnnngagagtgtgttttc |
271 |
Q |
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| T |
27762862 |
gttcattggcataagggtgtgacagcatctacgaaattaggaagggaagaaaccaaagcatatcaaagaaggtgtaaggaaaaaaagagagtgtgttttc |
27762961 |
T |
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| Q |
272 |
gttttactaagtacacctttctgatttctgaaaagcactacaccttttctgcactttctcacgtggtttatatatccttttttctaatatttcatttttc |
371 |
Q |
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| T |
27762962 |
gttttactaagtacacctttctgatttctgaaaagcactacaccttttctgcaccttctcacgtggtttatatatccttttttctaatatttcatttttc |
27763061 |
T |
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| Q |
372 |
atcatcagctcttatatataatacagtgatattt |
405 |
Q |
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| T |
27763062 |
atcatcaactcttatatataatacagtgatattt |
27763095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 27762684 - 27762812
Alignment:
| Q |
5 |
taggtacaagagccatttgatttgattatatttcctacaaactccaacacagatttgaatgtgaggtgtagctattacacagcttgttatgttgttttta |
104 |
Q |
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| T |
27762684 |
taggtacaagagccatttgatttgattatatttcctacaaactccaacacagatttgaatgtgaggtgtagctattacacagcttgttatgttgttttta |
27762783 |
T |
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| Q |
105 |
tgcttatttctatatagatttgggtccac |
133 |
Q |
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| T |
27762784 |
tgcttatttctatatagatttgggtccac |
27762812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 13788636 - 13788691
Alignment:
| Q |
350 |
tttttctaatatttcatttttcatcatcagctcttatatataatacagtgatattt |
405 |
Q |
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| T |
13788636 |
tttttccaatatttgttttttcatcatcaactcttatataaaatatagtgatattt |
13788691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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