View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_high_9 (Length: 367)
Name: NF10956_high_9
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 35392345 - 35392697
Alignment:
| Q |
1 |
aatctattaaagctgaaaaacatgcagatcaaattgattatgaagtgatttgtttattcaaacatccacttggtatagtccattaaacacgatattacnn |
100 |
Q |
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| T |
35392345 |
aatctattaaagctgaaaaacatgcagatcaaattgattatgaagtgatttgcttattcaaacatccacttggtatagtccattaaacacgatcttactt |
35392444 |
T |
|
| Q |
101 |
nnnnnn---atccaaccaagtaaatagaatgaaattaaatgaggttgtcaagtgatagcatttttgttttaaaacaaatatattttttcgcgaacaattg |
197 |
Q |
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| T |
35392445 |
tttttttttatccaaccaagtaaatataatgaaactaaatgaggttgtcaagtgatagcatttttgttttaaaacaaatgtattttttcgcgaacaattg |
35392544 |
T |
|
| Q |
198 |
caggcacaaatccattgatgtaaatgtgatccatttatggggttgtcctttctcaacaaatgtttttcatacgtaccgatcagagatcaaacctgaatca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35392545 |
caggcacaaatccattgatgtaaatgtgatccatttatggggttgtcctttctcaacaaatgtttttcatacgtactgatcagagatcaaacctgaatca |
35392644 |
T |
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| Q |
298 |
aatggtt-nnnnnnnnctaagtatttatcacttatgctacactatagtggtaa |
349 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35392645 |
aatggttaaaaaaaaactaagtatttatcacttatgctacactatagtggtaa |
35392697 |
T |
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