View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_10 (Length: 366)
Name: NF10956_low_10
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_10 |
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| [»] scaffold0176 (4 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 42 - 361
Target Start/End: Original strand, 28027 - 28341
Alignment:
| Q |
42 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28027 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
28126 |
T |
|
| Q |
142 |
tgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcact-nnnnnnnnnnnctcatcatcct |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28127 |
tgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcactaaaaaaaaaaaactcatcatcc- |
28225 |
T |
|
| Q |
241 |
tgtcaattatcatcatcttcaattgtgtctttg-tcatctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatat |
339 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28226 |
------ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatat |
28319 |
T |
|
| Q |
340 |
gtttactgcttttcttctctct |
361 |
Q |
| |
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|||||||||||||||| ||||| |
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|
| T |
28320 |
gtttactgcttttcttttctct |
28341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 42 - 361
Target Start/End: Original strand, 34530 - 34842
Alignment:
| Q |
42 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34530 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
34629 |
T |
|
| Q |
142 |
tgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcactnnnnnnnnnnnctcatcatcctt |
241 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
34630 |
tgtaaatagtaaat-agggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcagtaaaaaaaaaaactcatcatcc-- |
34726 |
T |
|
| Q |
242 |
gtcaattatcatcatcttcaattgtgtctttg-tcatctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatg |
340 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34727 |
-----ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatg |
34821 |
T |
|
| Q |
341 |
tttactgcttttcttctctct |
361 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
34822 |
tttactgcttttcttttctct |
34842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 27913 - 28028
Alignment:
| Q |
17 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27913 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaatt |
28012 |
T |
|
| Q |
117 |
aaggaatgtttttaat |
132 |
Q |
| |
|
|||||||||||||||| |
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| T |
28013 |
aaggaatgtttttaat |
28028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34415 - 34531
Alignment:
| Q |
17 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatat-aaattaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34415 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaaattaaat |
34514 |
T |
|
| Q |
116 |
taaggaatgtttttaat |
132 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34515 |
taaggaatgtttttaat |
34531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 42 - 361
Target Start/End: Original strand, 34167707 - 34168019
Alignment:
| Q |
42 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167707 |
atccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgatt |
34167806 |
T |
|
| Q |
142 |
tgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcactnnnnnnnnnnnctcatcatcctt |
241 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
34167807 |
tgtaaatagtaaat-agggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctcagtaaaaaaaaaaactcatcatcc-- |
34167903 |
T |
|
| Q |
242 |
gtcaattatcatcatcttcaattgtgtctttg-tcatctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatg |
340 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167904 |
-----ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatg |
34167998 |
T |
|
| Q |
341 |
tttactgcttttcttctctct |
361 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
34167999 |
tttactgcttttcttttctct |
34168019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 34205448 - 34205611
Alignment:
| Q |
43 |
tccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgattt |
142 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34205448 |
tccaatttttcataaacaaagaatgtgggtactaggtaagagttttaaactagaactagaatataaattaaattaaggaatgtttttaataatttgattt |
34205547 |
T |
|
| Q |
143 |
gtaaatagtaaataagggtactacagctaaagtatagg----taatgttgttaacaactgatcat |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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|
| T |
34205548 |
gtaaatagtaaata-gggtactacagctaaagtataggtaggtaatgttattaacaactcatcat |
34205611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34167592 - 34167708
Alignment:
| Q |
17 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatat-aaattaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
34167592 |
agttgatatacttcaagttgggattatccaatttttcataaacaaagaatgtaggtactaggtaagagttttaaactagaactagaatataaaattaaat |
34167691 |
T |
|
| Q |
116 |
taaggaatgtttttaat |
132 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34167692 |
taaggaatgtttttaat |
34167708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 34205614 - 34205729
Alignment:
| Q |
247 |
ttatcatcatcttcaattgtgtctttgt-catctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatgtttac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34205614 |
ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatgtttaa |
34205713 |
T |
|
| Q |
346 |
tgcttttcttctctct |
361 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
34205714 |
tgcttttcttttctct |
34205729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 34205321 - 34205446
Alignment:
| Q |
17 |
agttgatatacttcaagttgggattatccaatttttcataaaca-----------aagaatgtaggtactaggtaagagttttaaactagaactagaata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34205321 |
agttgatatacttcaagttgggattatcgaatttttcataaacattcaaaaaaaaaagaatgtaggtactaggtaagagttttaaactagaactagaata |
34205420 |
T |
|
| Q |
106 |
t-aaattaaattaaggaatgttttta |
130 |
Q |
| |
|
| |||||||||||| ||||||||||| |
|
|
| T |
34205421 |
taaaattaaattaaagaatgttttta |
34205446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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