View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_12 (Length: 314)
Name: NF10956_low_12
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 25454814 - 25454527
Alignment:
| Q |
11 |
aagaaatgtagtactctgctttgttggtatgagaccagtgagaatcttattttggaacacgaatcctagaatcatagcaagaacatgacaaattgacata |
110 |
Q |
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| T |
25454814 |
aagaaatgtagtactctgctttgttggtatgagaccagtgagaatcttattttggaacacgaatcctagaatcatagcaagtacatgacaaattgacata |
25454715 |
T |
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| Q |
111 |
ggtttcgggaggtgagcaacaatgttgatttataacgttgttgcaaaatatttataagcttttatgagcagaatttgttgaggatatctactaatctaag |
210 |
Q |
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| T |
25454714 |
ggtttcgggaggtgagcaacaatgttgatttataacgttgttgcaaaagatttataagctcttatgagcagagtttgttgaggatatctactaatctaag |
25454615 |
T |
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| Q |
211 |
ctnnnnnnnnnnnnnnnnnnggaggaaacagtcaagatgtatacatcaaatcgaataatcaagaacattttcaaaatgcacattatagt |
299 |
Q |
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| T |
25454614 |
ct-aaaaaaacgaaaaaaaaggaggaaacagtcaagatgtatacatcaaatcgaataatcaagaacattttcaaaatgcacattatagt |
25454527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 25460141 - 25460203
Alignment:
| Q |
11 |
aagaaatgtagtactctgctttgttggtatgagaccagtgagaatcttattttggaacacgaa |
73 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||||| |
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| T |
25460141 |
aagaaatgtagtactccactttgttggtatgagaccaatgataatcttattttaggacacgaa |
25460203 |
T |
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