View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_15 (Length: 288)
Name: NF10956_low_15
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 2380882 - 2380617
Alignment:
| Q |
7 |
tgagatgaaaagatgcttcaactaacgatatacaaccgacagtgcagtcgtggcttgacacgtatgtccttcaaaggatcaaaatgatgatgttttattg |
106 |
Q |
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| T |
2380882 |
tgagatgaaaagatgcttcaactaactatatacaaccgacagtgcagtcgtggcttgacacgtatgtccttcaaaggatcaaaatgatgatgttgtattg |
2380783 |
T |
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| Q |
107 |
agatggcaatgtgttcccacttatgtggaggcatgtcattggttgttacatattttatggttcgtacattcatgtgactctatattattcaacatggccc |
206 |
Q |
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| T |
2380782 |
agatggcaatgtgttgccacttatgtggaggcatatcattggttgttacatattttatggttcgtccattcatgtgactctaaattattcaacatggccc |
2380683 |
T |
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| Q |
207 |
atgcttgagatatttattcattcatttcatttgaattttgatatcccaccacctatgagttatacc |
272 |
Q |
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| T |
2380682 |
atgcttgagatatttattcattcatttcatttgaattttgatatcccaccacctatgagttatacc |
2380617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 2359989 - 2359820
Alignment:
| Q |
68 |
gtatgtccttcaaaggatcaaaatgatgatgttttattgagatggcaatgtgttcccacttatgtggaggcatgtcattggttgttacatattttatggt |
167 |
Q |
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| T |
2359989 |
gtatgtccttcaaaggacgacaatgatgaactcgtactcagatggcaatgtgcttccacg---gtggaggcatgacattggtagttacacatttaatggt |
2359893 |
T |
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| Q |
168 |
tcgtacattcatgtgactctatattattcaacatggcccatgcttgagatatttattcattcatttcatttga |
240 |
Q |
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| T |
2359892 |
tcgtacattcatgtgactctatattattcaacatggcccatgcttgagatatttattcattcatcttatttga |
2359820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 2360291 - 2360254
Alignment:
| Q |
30 |
aacgatatacaaccgacagtgcagtcgtggcttgacac |
67 |
Q |
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| T |
2360291 |
aacgatatacaaccgacagtttagtcgtggcttgacac |
2360254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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