View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_16 (Length: 272)
Name: NF10956_low_16
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_16 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 6791567 - 6791817
Alignment:
| Q |
10 |
gcagagactcagaattgattgttctacctgtgttctatgctgctgccaatcccacttacggaagtttagagggaggtatgtttggaggagacgcttttca |
109 |
Q |
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| T |
6791567 |
gcagagactcagaattgattgtcctacctgtgttctatgctgctgtcaatcccacgtacggaagtttagagggaggtatgtttggaggagacacttttca |
6791666 |
T |
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| Q |
110 |
tgattttcttaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggt |
209 |
Q |
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| T |
6791667 |
tgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggt |
6791766 |
T |
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| Q |
210 |
tcaagtgatctcatacataaaccaatatataggtaattttaagttcttttt |
260 |
Q |
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| T |
6791767 |
tcaagtgatctcatacataaaccaatatataggtaattttaagttcttttt |
6791817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 6593957 - 6593778
Alignment:
| Q |
81 |
ggaggtatgtttggaggagacgcttttcatgattttcttaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
180 |
Q |
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|||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6593957 |
ggagatatgtttggaggagacacttttcatgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacctgggtagcag |
6593858 |
T |
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| Q |
181 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttcttttt |
260 |
Q |
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| T |
6593857 |
cgatcactaaagctaacaaatatttaggatcacgtgatctcatacccaaacccatatacaggtaattttaagttcttttt |
6593778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 7062 - 6812
Alignment:
| Q |
10 |
gcagagactcagaattgattgttctacctgtgttctatgctgctgccaatcccacttacggaagtttagagggaggtatgtttggaggagacgcttttca |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7062 |
gcagagactcagaattgattgtcctacctgtgttctatgctgctctcaatcccacgtacggaagtttagagggaggtatgtttggaggagacacttttca |
6963 |
T |
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| Q |
110 |
tgattttcttaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggt |
209 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6962 |
tgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggt |
6863 |
T |
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| Q |
210 |
tcaagtgatctcatacataaaccaatatataggtaattttaagttcttttt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6862 |
tcaagtgatctcatacataaaccaatatataggtaattttaagttcttttt |
6812 |
T |
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