View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_20 (Length: 250)
Name: NF10956_low_20
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24640547 - 24640306
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640547 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgt |
24640448 |
T |
|
| Q |
101 |
ttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640447 |
ttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctt |
24640348 |
T |
|
| Q |
201 |
tttagaggtctccttgcactcattgtaagatttttctgtgct |
242 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24640347 |
tttagaggtctccttacactcattgtaagatttttctgtgct |
24640306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 24675650 - 24675409
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttat----cacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaa |
96 |
Q |
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||||||||||||||||| |||| | ||||||||||||||||||||| || ||||||| ||||||| |||||||||||||| |||||||| ||| || |
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| T |
24675650 |
ttgcaattcatgttttttttttttgtctcacaatttagggatttaataattgatttgtcattgtacttgaggagcgtgaagaacttacaattcattgaaa |
24675551 |
T |
|
| Q |
97 |
ctgtttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgat |
196 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| | |||||||| |
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| T |
24675550 |
ctgtttcgaaaaatggtagttaatacgtgtattatttgcagagttcagcaaacctgaagccacattatgcagcctgtttttctcatatagctgggatgat |
24675451 |
T |
|
| Q |
197 |
tctttttagaggtctccttgcactcattgtaagatttttctg |
238 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
24675450 |
tctttttaaaggtctccttgcagtcattgtaagatttttctg |
24675409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 24691739 - 24691545
Alignment:
| Q |
10 |
atgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaa |
109 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||| |||||||| ||| |||||||||||||| | |
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| T |
24691739 |
atgtttttcttttctcacaatttatggatttaataattggtctgtcattgtacttaaggagcatgaagaacttacaattcattgcaactgtttcgaaata |
24691640 |
T |
|
| Q |
110 |
tggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattcttttta |
204 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| | ||||| |||||||||||||||| |
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| T |
24691639 |
tggtagttaatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattcttttta |
24691545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 24719080 - 24718956
Alignment:
| Q |
26 |
acaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatg |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
24719080 |
acaatttagggatttaataattggtttgtcattgtacttgaggagcatgaagaatttacaattcattgcaactatttcaaaaaatggtagttaatacatg |
24718981 |
T |
|
| Q |
126 |
tattatttgcagagttcagcaaacc |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
24718980 |
tattatatgcagagttcagcaaacc |
24718956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 24652528 - 24652352
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| || |||| |||||| ||||||| ||| | |||| ||||||| ||| ||| ||| ||||||| |
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| T |
24652528 |
ttgcaattcatgttattcttttctcacaatttaggggttgaatagttggtttttcactgttcttgatgagccagaagaatgtacgattcattgcaactgt |
24652429 |
T |
|
| Q |
101 |
ttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgttttt |
177 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||| |
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| T |
24652428 |
ttcgtaaaattgtagttaatacatgtattatttgcagagttcagcaaaaatcaagcaatattatgcaacctgttttt |
24652352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 24713930 - 24713761
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgt |
100 |
Q |
| |
|
|||| |||||| || ||||||| |||||||||||||||||||||| ||||||| || | | ||||| |||| |||||||||||| || | | ||| || |
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| T |
24713930 |
ttgctattcatcttattcttttctcacaatttagggatttaataattggtttgccattattcttaatgagcaggaagaatttacattttagtgcaagggt |
24713831 |
T |
|
| Q |
101 |
ttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacc |
170 |
Q |
| |
|
||||||||||||||||| |||| ||||| || ||||||||||||||||| | |||| | ||||||||||| |
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| T |
24713830 |
ttcgaaaaatggtagttgatacttgtataatatgcagagttcagcaaacatcaagcaatattatgcaacc |
24713761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 24686299 - 24686180
Alignment:
| Q |
120 |
tacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctccttgcac |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||| | ||||||||||||||||||| | ||||| || ||| |||||||| | ||||||||||||| |
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|
| T |
24686299 |
tacatgtattatttgcagaattcagcaaacatcaagcaatattatgcaacctgtttttctcgtatcgctggaatggttctttttggtggtctccttgcac |
24686200 |
T |
|
| Q |
220 |
tcattgtaagatttttctgt |
239 |
Q |
| |
|
|| ||||||||||| |||| |
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|
| T |
24686199 |
ccaatgtaagattttgctgt |
24686180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 24632778 - 24632644
Alignment:
| Q |
18 |
cttttatcacaatttagggatttaataagtggtttg-tcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagt |
116 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||| ||| | ||| ||||||||||||| | ||| ||| |||||||||||||||||| |
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|
| T |
24632778 |
cttttctcacaatttagggatttaataatcggttttatcactgttcttgat-agcatgaagaatttacattagattgcaagggtttcgaaaaatggtagt |
24632680 |
T |
|
| Q |
117 |
t-aatacatgtattatttgcagagttcagcaaacct |
151 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| |
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|
| T |
24632679 |
ttaacacatgtattatttgcagagttcagcaaacct |
24632644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 24717148 - 24717011
Alignment:
| Q |
99 |
gtttcgaaaaatggtagtta-atacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgatt |
197 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||| |||| ||||||| |||| | || ||| | |
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| T |
24717148 |
gtttcgaaaaatggtagtttgatacatgtattatttgcagagttcagcaaacctcaagcaatattatg-aaccagtttttcttgtatctt--ggttgagt |
24717052 |
T |
|
| Q |
198 |
ctttttagaggtctccttgcactcattgtaagatttttctg |
238 |
Q |
| |
|
|||||| | |||||||| ||| || ||||||||||||||| |
|
|
| T |
24717051 |
ctttttggtggtctcctagcatccaatgtaagatttttctg |
24717011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24686380 - 24686296
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaatttaca |
85 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||| | |||||||||| ||| ||| | |||| ||||||||||||| |
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|
| T |
24686380 |
ttgcaatacatgtttttcttttctcacaatttagggttttaattattggtttgtcattgttcttgacgagcatgaagaatttaca |
24686296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24654701 - 24654621
Alignment:
| Q |
1 |
ttgcaattcatgtttttcttttatcacaatttagggatttaataagtggtttgtcactgtacttaaggagcgtgaagaattt |
82 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||| ||||||||| |||||||||| ||| ||| | |||| |||||||||| |
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|
| T |
24654701 |
ttgcaattcatatttttctttgcttacaatttagg-atttaataattggtttgtcattgttcttgaagagcatgaagaattt |
24654621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 4037573 - 4037617
Alignment:
| Q |
158 |
acattatgcaacctgtttttcacctatcgtagggatgattctttt |
202 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||| |
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|
| T |
4037573 |
acattatgcaacctgtttttctcatatcgttgggatgattctttt |
4037617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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