View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_22 (Length: 240)
Name: NF10956_low_22
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9399107 - 9398892
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
108 |
Q |
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| T |
9399107 |
aggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
9399008 |
T |
|
| Q |
109 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
208 |
Q |
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| T |
9399007 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
9398908 |
T |
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| Q |
209 |
tggtcactagaagatg |
224 |
Q |
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|||||||||||||||| |
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| T |
9398907 |
tggtcactagaagatg |
9398892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9381682 - 9381467
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgta |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
9381682 |
aggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattattacaaaaagctcgtgaagaaatagacaatata |
9381583 |
T |
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| Q |
109 |
gtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttccta |
208 |
Q |
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| T |
9381582 |
gtagggaaaaatagactagtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacccgtcccta |
9381483 |
T |
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| Q |
209 |
tggtcactagaagatg |
224 |
Q |
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|||||||||||||||| |
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| T |
9381482 |
tggtcactagaagatg |
9381467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 23244287 - 23244503
Alignment:
| Q |
9 |
aggagcagagacaacatcaatttcaacagaatgggcattagttgagctaatgaacaa-cccttcattgttacaaaaagctcgtgaagaaatagacaatgt |
107 |
Q |
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|||| |||| |||||| |||| |||||||||||||||||||| || || || || || ||| || || | |||||||||||||||||||| ||||| | |
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| T |
23244287 |
aggaacagatacaacagcaatatcaacagaatgggcattagtagaactcataaaaaaacccatctttactccaaaaagctcgtgaagaaatcgacaacat |
23244386 |
T |
|
| Q |
108 |
agtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttcct |
207 |
Q |
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| T |
23244387 |
agtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagagaaacatttcgtcttcacccaccagttcct |
23244486 |
T |
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| Q |
208 |
atggtcactagaagatg |
224 |
Q |
| |
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||||| || |||||||| |
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| T |
23244487 |
atggttacaagaagatg |
23244503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 23223371 - 23223331
Alignment:
| Q |
145 |
ccaaatcttccttatattcaagccataataaaagaaacatt |
185 |
Q |
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| T |
23223371 |
ccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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