View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10956_low_23 (Length: 238)
Name: NF10956_low_23
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24640736 - 24640956
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24640736 |
atatctaatatggttgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
24640835 |
T |
|
| Q |
101 |
tattggttttacgaggtgcaaggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24640836 |
tattggttttacgaggtgcaaggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaac |
24640935 |
T |
|
| Q |
201 |
actaatgacgctactgttctt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24640936 |
actaatgacgctactgttctt |
24640956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24691958 - 24692169
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24691958 |
atatctaatatggtcgagaatttttaatttcagggatatattaaaattttgtcaattgcaggacaaatc---------ccttgccatttcgtgaaatcca |
24692048 |
T |
|
| Q |
101 |
tattggttttacgaggtgcaaggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692049 |
tattggttttacgaggtgcatggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaac |
24692148 |
T |
|
| Q |
201 |
actaatgacgctactgttctt |
221 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
24692149 |
actaacgacgctactgttctt |
24692169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 24675839 - 24676047
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||| || ||||||| || |
|
|
| T |
24675839 |
atatctaatatgatcgagcattttttatttcagggatatgtcgaaattttgttagttgcaggacaaatcttccttatcccttgccaatttgtgaaattca |
24675938 |
T |
|
| Q |
101 |
tattgg-ttttacgaggtgcaaggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaa |
199 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||| ||| || |||||||||| || || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24675939 |
tattggtttttacgaggtgcatggacttcaatgaaataatattctaatagcacggcaagtccacacatgttaagtaaaagggatgtgttttttaattgaa |
24676038 |
T |
|
| Q |
200 |
cactaatga |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
24676039 |
cactaatga |
24676047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24719288 - 24719397
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
24719288 |
atatcaaatatgaccgagaattttgaatttcagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccg |
24719387 |
T |
|
| Q |
101 |
tattggtttt |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
24719388 |
tattggtttt |
24719397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24677857 - 24677966
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||| ||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
24677857 |
atatctaatatgaccgagaattttgaatttcagggatatatcaaaattttgttagctggaggataaaacttcccaatcccttgccattttttgaaatccg |
24677956 |
T |
|
| Q |
101 |
tattggtttt |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
24677957 |
tattggtttt |
24677966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24686560 - 24686669
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||| || |||||||| ||||||||||| |||||||||||| || | |||||||| ||||| |||||||| |
|
|
| T |
24686560 |
atatctaatatgatcgagaattttcaattccaaggatatattgaaattttgttagttgcaggacaaaactccgcaatcccttctcattttgtgaaatcag |
24686659 |
T |
|
| Q |
101 |
tattggtttt |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
24686660 |
tattggtttt |
24686669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 24714111 - 24714257
Alignment:
| Q |
1 |
atatctaatatggtcgagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatcca |
100 |
Q |
| |
|
|||||||||||| | ||||||||| ||| ||||| ||||||| | || ||| || |||||| ||||| ||||||||| ||||| ||||| |||||||| |
|
|
| T |
24714111 |
atatctaatatgattgagaattttcaatatcaggtatatatcgacatgttgatagttgcagaacaaa-cttcctaattccttgtcattttatgaaatcct |
24714209 |
T |
|
| Q |
101 |
tattgg-ttttacgaggtgcaaggactttgatgacatattagtctaat |
147 |
Q |
| |
|
|||||| |||||| |||| || |||| ||||| |||||||||||||| |
|
|
| T |
24714210 |
tattggtttttacaaggtacatggacattgatcgcatattagtctaat |
24714257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University