View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_24 (Length: 236)
Name: NF10956_low_24
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 26051503 - 26051292
Alignment:
| Q |
10 |
actgagaagaaagaaaaataactgatagtaaaattgtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtaccctt |
109 |
Q |
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||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26051503 |
actgaaaagaaagaaaaaaaactgatagttaaatagtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtaccctt |
26051404 |
T |
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| Q |
110 |
tcccaacaaatacattgttctttgacatgaccatcttatcggactcaaatgacactttaacacctactttgtttaacagtgcaacagaaatcaaattggt |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26051403 |
tcccaacaaatactttgttctttgacatgaccatcttatcggactcaaacgacactttaacacctactttgtttaacagtgctacagaaatcaaattggt |
26051304 |
T |
|
| Q |
210 |
cctaatggtagg |
221 |
Q |
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|||||||||||| |
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| T |
26051303 |
cctaatggtagg |
26051292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 27076519 - 27076310
Alignment:
| Q |
10 |
actgagaagaaagaaaaataactgatagtaaaattgtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtaccctt |
109 |
Q |
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||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27076519 |
actgaaaagaaagaaaaa--actgatagttaaatagtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtacccgt |
27076422 |
T |
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| Q |
110 |
tcccaacaaatacattgttctttgacatgaccatcttatcggactcaaatgacactttaacacctactttgtttaacagtgcaacagaaatcaaattggt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
27076421 |
tcccaacaaatacattgttctttgacatgaccatcttatcggactcaaacgacactttaacacctactttgtttaatagtgctacagaaatcaaattggt |
27076322 |
T |
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| Q |
210 |
cctaatggtagg |
221 |
Q |
| |
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|||||||||||| |
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| T |
27076321 |
cctaatggtagg |
27076310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 14633370 - 14633546
Alignment:
| Q |
45 |
gtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatcacagtaccctttcccaacaaatacattgttctttgacatgaccatc |
144 |
Q |
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|||| ||| |||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||| |
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| T |
14633370 |
gtctaaggagatgcaaaactaatcggaaacactaagaacaaatagcccctgatcacaataccctttctcaataaatacattattctttgtaatgaccatc |
14633469 |
T |
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| Q |
145 |
ttatcggactcaaatgacactttaacacctactttgtttaacagtgcaacagaaatcaaattggtcctaatggtagg |
221 |
Q |
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|||||| | ||||||||||||||||| |||||||||||||||||||| ||| |||| || ||||||||||| ||||| |
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| T |
14633470 |
ttatcgaattcaaatgacactttaactcctactttgtttaacagtgctacataaattaatttggtcctaatagtagg |
14633546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 32894204 - 32894128
Alignment:
| Q |
23 |
aaaaataactgatagtaaaattgtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctgatca |
99 |
Q |
| |
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|||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32894204 |
aaaaatgactgatagttaaggagtcttaggggatgcaaacctaatcagaaacactaagaacaaaaagcccctaatca |
32894128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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