View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_29 (Length: 211)
Name: NF10956_low_29
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_29 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 14435545 - 14435335
Alignment:
| Q |
1 |
atgctaatgctatgctatggcaaaggaacgagaacaatgaatcagatatggcttctcatgatagagctttcctacttttcaaatttttgtaatgggaaat |
100 |
Q |
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| T |
14435545 |
atgctaatgctatgctatggcaaaggaacgagaacaatgaatcagatatggcttctcatgatagagctttcctacttttcaaatttttgtaatgggaaat |
14435446 |
T |
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| Q |
101 |
taaattttcaaatgataaacctactgtttaaatatatataatgttgggaaattaacacataaatatggcaacacaccaaaatatacaaaggaaataaaat |
200 |
Q |
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| T |
14435445 |
taaattttcaaatgataaacctactgtttaaatatatataatgttgggaaattaacacataaatatggcaacacaccaaaatatacagagaaaataaaat |
14435346 |
T |
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| Q |
201 |
tccccaaactt |
211 |
Q |
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| T |
14435345 |
tccccaaactt |
14435335 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 6858073 - 6858012
Alignment:
| Q |
148 |
gaaattaacacataaatatggcaacacaccaaaatatacaaaggaaataaaattccccaaactt |
211 |
Q |
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| T |
6858073 |
gaaattaacacataaatatggtaacacatc--aatatgcagcggaaataaaatttcccaaactt |
6858012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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