View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10956_low_6 (Length: 440)
Name: NF10956_low_6
Description: NF10956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10956_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 34054566 - 34054977
Alignment:
| Q |
11 |
caaaggcagccatattacataggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataa |
110 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054566 |
caaaggcagccatattacacaggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataa |
34054665 |
T |
|
| Q |
111 |
cagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054666 |
cagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaa |
34054765 |
T |
|
| Q |
211 |
atctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054766 |
atctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagt |
34054865 |
T |
|
| Q |
311 |
tgcctcaaaataatttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggctataactgttgtc |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34054866 |
tgcctc--gataatttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggttataactgttgtc |
34054963 |
T |
|
| Q |
411 |
cgacagcctccttt |
424 |
Q |
| |
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|||||||||||||| |
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| T |
34054964 |
cgacagcctccttt |
34054977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 152 - 411
Target Start/End: Complemental strand, 47383293 - 47383029
Alignment:
| Q |
152 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
250 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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| T |
47383293 |
tcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
47383194 |
T |
|
| Q |
251 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
347 |
Q |
| |
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|||| |||| ||||||||||||||| | |||||| |||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
47383193 |
ctctcgaacacctccttcagcattatatcagctatctccttaacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaact |
47383094 |
T |
|
| Q |
348 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
411 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||| ||||| |
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| T |
47383093 |
ctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggttataactgctgtcc |
47383029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 152 - 411
Target Start/End: Complemental strand, 47818366 - 47818094
Alignment:
| Q |
152 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctc-gactttcagt |
250 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
47818366 |
tcttagaggtctggcaccataattaggattataaccttcatcgaccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagt |
47818267 |
T |
|
| Q |
251 |
ttctctgacacttccttcagca-ttatacaaactatctact-------taacatccagttatgtaagttgcctcaaaataat---ttcatccagcctatt |
339 |
Q |
| |
|
|||| |||| ||||| |||| ||||| | |||||| || || | ||||||| |||||||||||| |||| ||| ||||||||||||||| |
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| T |
47818266 |
ctctcgaacacctccttaagcaattatatcagctatctcctaactccttagcctccagttttgtaagttgcctgaaaacaatcatttcatccagcctatt |
47818167 |
T |
|
| Q |
340 |
caagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||||| |
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| T |
47818166 |
caagaactctggcctaaagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgtcc |
47818094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 47383442 - 47383348
Alignment:
| Q |
38 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
132 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383442 |
ggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctc |
47383348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 47818513 - 47818421
Alignment:
| Q |
38 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
132 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
47818513 |
ggcaatgaatttgcagcaccactactaccattgagcacaatcacatttccatcagaatcagcatccactata--agagtcgccctctttaatctc |
47818421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 45116366 - 45116297
Alignment:
| Q |
63 |
taccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
132 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||| |||||||||| || |||||||||||||| ||||| |
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|
| T |
45116366 |
taccattgagaacaatcacattaccctcggaatcaacatccactattacggagtcaccctctttgatctc |
45116297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 152 - 411
Target Start/End: Complemental strand, 40246007 - 40245743
Alignment:
| Q |
152 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
250 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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|
| T |
40246007 |
tcttagaggcctggccccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
40245908 |
T |
|
| Q |
251 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
347 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||| |||||| ||||||| || |||||||| || ||| |||||||| |||||||||||||||| |
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|
| T |
40245907 |
ctctcgaacacctccttcagcattatatctgctatctccttaacctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaact |
40245808 |
T |
|
| Q |
348 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
411 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||| |||||| | |||||||| ||||| |
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|
| T |
40245807 |
ctggcctaaagtattgtttcagctcttcggtcaccaagctcttgattctgttataactgctgtcc |
40245743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 40246156 - 40246059
Alignment:
| Q |
38 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctccct |
135 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40246156 |
ggcaatgaatctggagcaccagtactaccgttgagtacaatcacgtttccatcagaatcagcatccactataacagagtcgccctctttaatctccct |
40246059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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