View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_10 (Length: 555)
Name: NF10957_high_10
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 229 - 537
Target Start/End: Complemental strand, 1965401 - 1965095
Alignment:
| Q |
229 |
gcaatatgcaactgtcatgacaacttcattaatttaccgtttaaacaataatgtcacatataaactataatttgcaatcactaaaattctaaaaaacaag |
328 |
Q |
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| T |
1965401 |
gcaatatgcaaatgtcacggcaatgtcattaatttacggtattaacaataatgtcacgtataaactataatttgcaatcaataaaattctaaaaaacaag |
1965302 |
T |
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| Q |
329 |
tgaacgtaatactaccctcctccttctccttcgggcaatttgaagcttgatggcggggtgcatctcatcctgcattgtcctcgatagaccgtgtggtggt |
428 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
1965301 |
tgaacataatactaccctcctccttctccttcgggcaatttgaagcttgatggcggggtgcatctcatcctgcattgtcctcggtagacc--gtggtggt |
1965204 |
T |
|
| Q |
429 |
acttgtgtgattcgccatcatgcaaccactcctcaattatgcagtagacgttatgtatgacctggagtgtgttgggacggactttgccatggtcctttgc |
528 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || |
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| T |
1965203 |
acttgtgtgattcgccatcacgcaaccactcctccattatgcagtagacgttctgtatgacctggagtgtgttgggacggacttttccgtggtccttcgc |
1965104 |
T |
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| Q |
529 |
aatagttat |
537 |
Q |
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||||||||| |
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| T |
1965103 |
aatagttat |
1965095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1965685 - 1965565
Alignment:
| Q |
1 |
gatgaagcaataacttagtcaaggatagaaagagtcccaagagtcacaacggcagctgatttcaggtatgcagatagaacaacaactcttggtagaattg |
100 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965685 |
gatgaagcaataactcagtcaatgatagaaagagtcccaagagtcacaacggcagctgatttcaggtatgcagatagaacaacaactcttggtagaattg |
1965586 |
T |
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| Q |
101 |
ctgttttgtaatgaccaacac |
121 |
Q |
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||||||||||||||||||||| |
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| T |
1965585 |
ctgttttgtaatgaccaacac |
1965565 |
T |
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