View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_16 (Length: 479)
Name: NF10957_high_16
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 209 - 471
Target Start/End: Original strand, 46678775 - 46679037
Alignment:
| Q |
209 |
tatttaacattcccaattatggagttctattcaagtgatatggccaaatcaannnnnnnnnaataacatataactattttataaagataatgacatagat |
308 |
Q |
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| T |
46678775 |
tatttaacattcccaattatggagttctattcaagtgttatggccaaatcaattcttttt-aataacatataactattttataaagataacgacatagat |
46678873 |
T |
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| Q |
309 |
ttcacccaacagaatatagaaacaattgttatggccgaatgnnnnnnn-ttacaagctcaaagtaaaatttccgtgggaaaagtgtgagaaagcaaaagt |
407 |
Q |
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| T |
46678874 |
ttcacccaacagaatatagaaacaattgttatggccgaataaaaaaaaattacaagctcaaagtaaaatttccgtgggaaaagtgtgagaaagcaaaagt |
46678973 |
T |
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| Q |
408 |
gaaggttgtaaggtgactgtaattacctgtgtggaaactagctatagacaaagccgcctttgct |
471 |
Q |
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| T |
46678974 |
gaaggttgtaaggtgactgtaattacctgtgtgggaactagctatagacaaagccgcctttgct |
46679037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 46678487 - 46678686
Alignment:
| Q |
15 |
aaccttttcctagaaccaagataaaagaccaaataataatcatata-------------actgacaacataacaaaatcttctttaagttggaataggaa |
101 |
Q |
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| T |
46678487 |
aaccttttcctagaaccaagataaaagaccaaataataatcatatatgaatataaaataactgacaacataacaaactcttctttaagttggaataggaa |
46678586 |
T |
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| Q |
102 |
ctcttgtgtaactgttaaaaaactaacaaacaaactcttctcgaataacgttaacaaacaaacttaatcttactaataacatatattctggtgattcagc |
201 |
Q |
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| T |
46678587 |
ctcttgtgtaactgttaaaaaactaacaaacaaactcttctcgaataacgttaacaaacaaacttaatcttactaataacacatattctggtgattcagc |
46678686 |
T |
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