View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_18 (Length: 466)
Name: NF10957_high_18
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 31819978 - 31819538
Alignment:
| Q |
19 |
aaatgcttaataaaggggtaacatttttactaaatttgaatattctaaatgtcttgagagctgattcaatatgctccggattgtgaggctataactttgt |
118 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
31819978 |
aaatgcctaataaaggg-taacatttttactaaatttgaatattctaaatgtcttgagagctgattcaacatgctccggattgtgaggccataactttgt |
31819880 |
T |
|
| Q |
119 |
gactacttgcagtgacacatattttggttgtcttattaaaatccaactttatttcnnnnnnngatattttagattttaagaaaattattcgatgcatatt |
218 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31819879 |
gactacatgcagtcacacatattttggttgtcttattaaaatccaacttgatttcttttttcgatattttagattttaagaaaattattcgatgcatatt |
31819780 |
T |
|
| Q |
219 |
tagatttacggtgagtttgatagagttatactgagtcatcatgaattatgatttacatagattacattatgaagtttcaacgaaaccatgatatatacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31819779 |
tagatttacggtgagtttgatagagttatagtgagtcatcatgaattatgatttacatagattacatcatgaagtttcaacgaaaccatgatatatacat |
31819680 |
T |
|
| Q |
319 |
tgtaattttagcaaacccgctataaccctaattctaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31819679 |
tgtaattttagcaaacccgctataaccctaattttaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcatt |
31819580 |
T |
|
| Q |
419 |
ttcttttagacatattagagtttaagaagagttcatctcact |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31819579 |
ttcttttagacatattagagtttaagaagagttcatctcact |
31819538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University