View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_high_19 (Length: 455)

Name: NF10957_high_19
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_high_19
NF10957_high_19
[»] chr2 (2 HSPs)
chr2 (7-448)||(41070633-41071067)
chr2 (211-281)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (198-281)||(48488394-48488477)
chr7 (198-251)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (211-283)||(564896-564968)
chr5 (198-256)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (112-163)||(13018449-13018500)
chr8 (211-281)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (186-283)||(55969842-55969938)
chr4 (119-163)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (233-290)||(4044943-4045000)
chr1 (187-251)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 41071067 - 41070633
Alignment:
Q  7 gagagatgaatgtagtaattttatagttgagttggtttagtgatgttgacttgagacttcgagtgtgctagttttagtttcgattctctaaaataaaatg 106  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41071067 gagagatgaatgtagtaattctatatttgagttggtttagtgatgttgacttgagacttcgagtgtgctagttttagtttcgattctctaaaataaaatg 41070968  T
Q  107 tctaaatattttaaaggttttggtaacaagtgtcctaagcgcattgttcaaggaacctattnnnnnnnntttgtcttagaaacacatgctaaagttataa 206  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||         |||||||||||||||||| |||||||||||    
T  41070967 tctaaatattttaaaggttttgctaacaagtgtcccaagtgcattgtttaaggaacctattaaaaaaaaattgtcttagaaacacatgttaaagttataa 41070868  T
Q  207 ctccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttcatattttaatcgaaagtgnnnnn 306  Q
    |||||||||||||||||||||||      |||||  ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||         
T  41070867 ctccacaatttccaatgcaaacg------attttgaatgcttaaaaaatattataaatgcacttgttaacatttttcatattttaatcgaaagtg-tttt 41070775  T
Q  307 nngttaaaacaaacgcacgcacccaatannnnnnnaaatggtctccttcataaactaaggatcacaatctaatatctatagccaatataattcactcatt 406  Q
      ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41070774 ttgttaaaacaaacgcacgcacccaatatttttttaaatggtctccttcataaactaaggatcacaatctaatatctatagccaatataattcactcatt 41070675  T
Q  407 agacacgagggaaataaggggaaagagatgaagtatatgtca 448  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  41070674 agacaggagggaaataaggggaaagagatgaagtatatgtca 41070633  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 36904034 - 36904104
Alignment:
Q  211 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 281  Q
    ||||||||||||||||| || |||| ||||||||||||||| |||  | | |  |||||||||||||||||    
T  36904034 acaatttccaatgcaaaagttgctacttttagatgcttaaacaatgcccttaggacacttgttagcatttt 36904104  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 48488477 - 48488394
Alignment:
Q  198 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 281  Q
    ||||||||||   ||||||||||||||||| || |||| ||||||||||||||| |||| | | ||  ||||||||||||||||    
T  48488477 aagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaacaatacccttaagccacttgttagcatttt 48488394  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 28514697 - 28514750
Alignment:
Q  198 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaa 251  Q
    ||||||||||   ||||||||||||||||| || |||| |||||||||||||||    
T  28514697 aagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaa 28514750  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 564968 - 564896
Alignment:
Q  211 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttc 283  Q
    ||||||||||||||||| ||  ||| ||||||||||||||| ||| || |||  ||| |||||||||||||||    
T  564968 acaatttccaatgcaaaagttactatttttagatgcttaaacaatgtcctaaggacatttgttagcatttttc 564896  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 34338964 - 34339022
Alignment:
Q  198 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaata 256  Q
    ||||||||||  |||| ||||||||||||| || |||| ||||||||||||||| ||||    
T  34338964 aagttataaccacacactttccaatgcaaaagttgctatttttagatgcttaaacaata 34339022  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 13018449 - 13018500
Alignment:
Q  112 atattttaaaggttttggtaacaagtgtcctaagcgcattgttcaaggaacc 163  Q
    ||||||||| ||| ||| |||||||||||||||| |||||||| ||||||||    
T  13018449 atattttaagggtcttgttaacaagtgtcctaagggcattgtttaaggaacc 13018500  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 13079338 - 13079268
Alignment:
Q  211 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 281  Q
    ||||||||| ||| ||| ||  ||| ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  13079338 acaatttcctatgtaaaagttactacttttagatgcttaaacaatatcttaaaaacacctgttagcatttt 13079268  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 55969938 - 55969842
Alignment:
Q  186 aaacacatgctaaagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttc 283  Q
    ||||||||| |||||| | ||| | |||||||  |||||||| || |||| ||||| ||||||||| |||| | | || |||||||||||||||||||    
T  55969938 aaacacatgttaaagtcacaaccctacaatttttaatgcaaaagttgctatttttatatgcttaaacaatacccttaa-acacttgttagcatttttc 55969842  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 3121026 - 3121070
Alignment:
Q  119 aaaggttttggtaacaagtgtcctaagcgcattgttcaaggaacc 163  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||||    
T  3121026 aaaggtgttgttaacaagtgtcctaagagcattgtttaaggaacc 3121070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 4044943 - 4045000
Alignment:
Q  233 ctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttcatatttt 290  Q
    |||||| |||||||||||| ||| || |||| | |||| |||||||||||||||||||    
T  4044943 ctaattatagatgcttaaacaatgtcctaaagatacttattagcatttttcatatttt 4045000  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 3831451 - 3831387
Alignment:
Q  187 aacacatgctaaagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaa 251  Q
    |||||||| |||||| ||||||  |||||||||||||||||  |  ||| |||||||||||||||    
T  3831451 aacacatgttaaagtcataactgtacaatttccaatgcaaaaatttctacttttagatgcttaaa 3831387  T

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