View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_2 (Length: 928)
Name: NF10957_high_2
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 824; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 20 - 923
Target Start/End: Original strand, 585789 - 586700
Alignment:
| Q |
20 |
gaggaatgattcaacctgaaagtttaattgaagtatgtgatatg-------tgatacaactttatagcttactatgaatgaaacatgttctagggaaact |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
585789 |
gaggaatgattcaacctgaaagtttaattgaagtatgtgatatgcgatatgtgatacaactttatagcttactatgaatgaaacatgttctagggaaact |
585888 |
T |
|
| Q |
113 |
gaaacattattcacacataaatcttgggctctgannnnnnn-aatatttcatactgatttgacgagccttctgctttgtttagggtctgctaacattcct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
585889 |
gaaacattattcacacataaatcttgggctctgattttttttaatatttcatactgatttgacgagccttctgctttgtttagggtctgctaacattcct |
585988 |
T |
|
| Q |
212 |
tgatgctggtcctagaggaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctggat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
585989 |
tgatgctggtcctagaggaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctcgat |
586088 |
T |
|
| Q |
312 |
gttgaaggtttctttattgtattgttgactaatttgcttctttttatatatcaacaatacatataattgatatcttctacatcgttgttaatagatggac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586089 |
gttgaaggtttctttattgtattgttgactaatttgcttctttttatatatcaacaatacatataattgatatcttctacatcgttgttaatagatggac |
586188 |
T |
|
| Q |
412 |
tttgccaacctaccttatttcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaaactgtatttgtcatcgtca |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
586189 |
tttgccaacctaccttatttcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaaactgtatttgtcatcgtca |
586288 |
T |
|
| Q |
512 |
taatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagcgtgaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
586289 |
taatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagcgtgaa |
586388 |
T |
|
| Q |
612 |
agaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacctcactagagtttgagaaactcaggatatga |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
586389 |
agaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacctcactagagtttgagaaactcaggatatga |
586488 |
T |
|
| Q |
712 |
tgacagggaaagttggttagatcagaaatgtaattttgatattttgaaaaaatatccagtaccatacttttgaaaacatatatcnnnnnnnggatatttc |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
586489 |
tgacagggaaagttggttagatcagaaatgtaattttgatattttgaaaaaatatccagtaccatacttttgaaaacatatatctttttttggatatttc |
586588 |
T |
|
| Q |
812 |
ttggatatatgtatatatccaagtgtacagtagaattatcagtgtccattacatgtatgacacagacacatatctcgttacatctgacccatcccgtctc |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
586589 |
ttggatatatgtatatatccaagtgtacagtagaattatcagtgtccattacatgtatgacacagacacatatctcgttacatctgacccatcccgtctc |
586688 |
T |
|
| Q |
912 |
tgctcctcctca |
923 |
Q |
| |
|
|| |||| |||| |
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|
| T |
586689 |
tgttccttctca |
586700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 396 - 714
Target Start/End: Complemental strand, 536655 - 536323
Alignment:
| Q |
396 |
ttgttaatagatggactttgccaacctaccttatt---tcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaa |
492 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| | |||||||| ||||| | ||||| |||||| ||||||||||||||| ||||| ||||||||| |
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|
| T |
536655 |
ttgttaattgatggaccttgcccacctaccttaatccttcatttggctttgtaatgaaaatattttctgccagaatcttatgcctattactgatggtaaa |
536556 |
T |
|
| Q |
493 |
actgtatttgtcat-----------cgtcataatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaag |
581 |
Q |
| |
|
| ||| |||| ||| ||| | ||||| |||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||| |
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|
| T |
536555 |
attgtctttgacatgttttagtcaacgtaaatatctttgttgatgttacaactactgtagattcagatgcgagtgaagtgggagatgaggaagttcaaag |
536456 |
T |
|
| Q |
582 |
aaaactagcagcttcattggaaagcgtgaaagaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacc |
681 |
Q |
| |
|
| || | ||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||| ||||||||||||||||||| |
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|
| T |
536455 |
agcgctggaagcttcatttaaaagcgtgaaagaatcaagtgaaattgctggaggagataataaatatgaaaatgttgctagcaacttgcaagaaacaaca |
536356 |
T |
|
| Q |
682 |
tcactagagtttgagaaactcaggatatgatga |
714 |
Q |
| |
|
| | ||||||||||||||| |||||||||| |
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|
| T |
536355 |
gtaatggagtttgagaaactcgtgatatgatga |
536323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 536985 - 536783
Alignment:
| Q |
22 |
ggaatgattcaacctgaaagtttaattgaagtatgtgatatgtgatacaactttatagcttactatgaatgaaacatgttctagggaaactgaaacatta |
121 |
Q |
| |
|
|||||| || ||||| |||||||| | ||||||||||||||||||||| |||| |||||| ||||||| ||||||| || ||||||||||||||||| | |
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|
| T |
536985 |
ggaatggttgaacctcaaagtttattagaagtatgtgatatgtgatacgacttcatagct-actatgatggaaacattttttagggaaactgaaacataa |
536887 |
T |
|
| Q |
122 |
ttcacacataaatcttgggctctgannnnnnnaatatttcatactgatttgacgagccttctgctttgtttagggtctgctaacattccttgatgctggt |
221 |
Q |
| |
|
|| ||| ||||||||| | |||| || ||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
536886 |
tttacatttaaatcttgtgttctgttgtttttaacatttctttctgatttgacgaaccttgtgctttgtttagggtctgctaacattccttgatgctggt |
536787 |
T |
|
| Q |
222 |
ccta |
225 |
Q |
| |
|
|||| |
|
|
| T |
536786 |
ccta |
536783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 499 - 582
Target Start/End: Complemental strand, 3028397 - 3028311
Alignment:
| Q |
499 |
tttgtcatcgtcataatcttggtt---gatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaaga |
582 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| |
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|
| T |
3028397 |
tttgtcaccatcataatcttggttcatgatgttacagctactttagattcagattcaagtgaagaggaggatgaccaagttcaaaga |
3028311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 499 - 581
Target Start/End: Complemental strand, 3032411 - 3032326
Alignment:
| Q |
499 |
tttgtcatcgtcataatcttggtt---gatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaag |
581 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||||||||||||||||||| || ||| |||| |||||| ||||||||||| |
|
|
| T |
3032411 |
tttgtcaccgtcataatcttggttcatgatgttgcagctactgtagattcagattcaagtaaagaaatggatgacgaagttcaaag |
3032326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 507 - 678
Target Start/End: Complemental strand, 29813357 - 29813186
Alignment:
| Q |
507 |
cgtcataatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagc |
606 |
Q |
| |
|
||||||||| ||||||||| || |||||||| |||||||||| ||| | |||||||||||||||| ||||||||| || |||||||| ||||||||| |
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|
| T |
29813357 |
cgtcataattttggttgatatttcagctactttagattcagatgcgaataaagaggaggatgaggaggttcaaagagcgctggcagcttcgttggaaagc |
29813258 |
T |
|
| Q |
607 |
gtgaaagaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaaca |
678 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
29813257 |
gtgaaagaatcaagtgaaatggctgaaggagatgataaagaagcaaatgttgctggcaacgtgcaagaaaca |
29813186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 29813616 - 29813497
Alignment:
| Q |
220 |
gtcctagaggaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctggatgttgaagg |
319 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||| ||| || ||||| ||||||||||||||||||| ||||||||| || |||||| | |
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|
| T |
29813616 |
gtcctagaggaagttctagcccaccaaagcctaaaggtttgttgctcgtttctttca--ctgctggtttgttcagtgataggtcagctcgacgttgaaag |
29813519 |
T |
|
| Q |
320 |
tttctttattgtattgttgact |
341 |
Q |
| |
|
| |||| ||||| |||||||| |
|
|
| T |
29813518 |
tgtcttcattgtcctgttgact |
29813497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 29813812 - 29813647
Alignment:
| Q |
66 |
atacaactttatagcttactatgaatgaaacatgttctagggaaactgaaacatta-----ttcacacataaatcttgggctctgannnnnnnaatattt |
160 |
Q |
| |
|
||||||||| |||||||||| ||| ||| || |||||||||||||||||||| | ||||||||||||| ||||||||| | ||||| |
|
|
| T |
29813812 |
atacaacttcatagcttactgtgatggaattattttctagggaaactgaaacatcacatcattcacacataaattttgggctctcttgtttttactattt |
29813713 |
T |
|
| Q |
161 |
catactgatttgacgagccttctgctttg-tttagggtctgctaacattccttgatgctggtccta |
225 |
Q |
| |
|
| |||||||||||||| ||| |||||| |||||||||||||| ||||| ||||||||||||||| |
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|
| T |
29813712 |
cttactgatttgacgactcttgtgcttttatttagggtctgctaccattctttgatgctggtccta |
29813647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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