View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_24 (Length: 398)
Name: NF10957_high_24
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 41070650 - 41070282
Alignment:
| Q |
14 |
gagatgaagtatatgtcaaaaactaacgtggggcacaagtgagttggtctggcaagagcatgagcaagtatatttattggttagaggtgttgaatttggc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41070650 |
gagatgaagtatatgtcaaaaactaacgtggggcacaagtgagttggtctggcaagagcatgagcaagtatatttattggttagaggtgttgaatttggc |
41070551 |
T |
|
| Q |
114 |
ctggcctaatggactgaactgattgacctgtatttcatgatggttagaagtgttgaatctctttatcatttaaggtgataaagagatcaaaatataatcc |
213 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41070550 |
ctggcctaatggactgaacttattgacctgtatttcatgatggttagaagtgttgaatctctttatcatttaaggtgataaagagatcaaaatataatcc |
41070451 |
T |
|
| Q |
214 |
catgcaacccataatggttgggttgagagcttgataaattctaagtaa-ttgttttatagatgaagtatatgtttgacatatacccctccaacaattttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41070450 |
catgcaacccataatggttgggttgagagcttgataaattctaagtaatttgttttatagatgaagtatatgtttgacatatacccctccaacaatttcc |
41070351 |
T |
|
| Q |
313 |
tcaatgtttccagcattttacactctttttatttagattaaattataaatttggtctcttaacttatttt |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41070350 |
tcaatgtttccagcattttacactc-ttttatttagattaaattataaatttggtctcttaacttatttt |
41070282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University