View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_3 (Length: 850)
Name: NF10957_high_3
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 328 - 830
Target Start/End: Complemental strand, 38025749 - 38025252
Alignment:
| Q |
328 |
tgatcaacaattatatcatctggcttcattgcaccaaatacaaatctatgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttt |
427 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025749 |
tgatctacaattatatcatctggcttcattgcaccaaatacaaatttgtgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttt |
38025650 |
T |
|
| Q |
428 |
tgtatgtttcaatcaaattcaaaattggaagaaaatttggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtatactttt |
527 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025649 |
tgtatgtctcaatcaaattcaaaattggaagaaaatttggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtatactttt |
38025550 |
T |
|
| Q |
528 |
attgataacaaatttacactactccatctattcggtcctaatacacaatcatctacttcaatttcaatagttctgttttaacttttaaacactcagctca |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025549 |
attgataacaaatttacactactccatctattcggtcttaatacacaatcatctactt------caatagttctgttttaacttttaaacactcagctca |
38025456 |
T |
|
| Q |
628 |
agaatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagaaaatttaaagtactaccatctgatcatcataacacactcactacc- |
726 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025455 |
aaaatatttatcacgaacaaattaatcaagatgtggtaagtttttgttgatagcaaatttaaagtactaccatctgatcatcataacacactcactacca |
38025356 |
T |
|
| Q |
727 |
nnnnnnnnnnntaataatactgatcgggtatgcactgagaaacaaagatgtgaagaataaactttcctcattgaataatattgccgtttgatattacaaa |
826 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025355 |
aaaaaaaataaaaaaaatactgatcgggtatgcactgagaaacaaagatatgaagaataaactttcctcattgaataatattgccgtttgatattacaaa |
38025256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 48 - 465
Target Start/End: Complemental strand, 38032789 - 38032371
Alignment:
| Q |
48 |
acaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttctttatctttgtcctctcattcacctttttaaa |
147 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38032789 |
acaagaagcaagttattttatgtcacaccaacacggtcttcatctaaattttcttcattcttattttctttatctttgtcctctcattcccctttttaaa |
38032690 |
T |
|
| Q |
148 |
aaataaacaaacgatcctgtgaatat----gcccattctcaacactgatgtaggactcaacaactttataccaattttagaaattgtttttgctttggcc |
243 |
Q |
| |
|
||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38032689 |
aaacaaacaaacgatcttgtgaatatatatgcccattttcaacactgatgtaggactcaaca-ctttataccaattttagaaattgcttttgctttggcc |
38032591 |
T |
|
| Q |
244 |
tctgttacttgaataatagttcttgtttctccccttatccagtaaccaatgtatccccagatctatttgtgtaagagggtccaatgatcaacaattatat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38032590 |
tctgttacttgaataatagttcttgtttctccccttatccagtaaccaatgtatccccagatctatttgtgtaagagggtccattgatcaacaattatat |
38032491 |
T |
|
| Q |
344 |
catctggcttcattgcaccaaatacaaatctatgtgataagttgatgctagaacctatcccacaacaattaagcatctttcttttgt---atgtttcaat |
440 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
38032490 |
catctggcttcattgcaccaaata-----ctatgcgataagttgatgctagaacttatcccacaataattaagcatctttcttttgttaaatgtctcaat |
38032396 |
T |
|
| Q |
441 |
caaattcaaaattggaagaaaattt |
465 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38032395 |
caaattcaaaattggaagaaaattt |
38032371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 38025921 - 38025746
Alignment:
| Q |
17 |
atcaacaatattaacaagattttgctcgtcgacaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38025921 |
atcaacaatattaacaagattttgctcgtcaacaagaagcaagttattatacgtcaaaccaacacggtcttcatctaaattttcttcattcttattttct |
38025822 |
T |
|
| Q |
117 |
ttatctttgtcctctcattcacctttttaaaaaataaacaaacgatcctgtgaatatgcccattctcaacactgat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
38025821 |
ttatctttgtcctctcattcacctttttaaaaaataaacaaacgatcttgtgaatatgcccattttcagcactgat |
38025746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 465 - 554
Target Start/End: Complemental strand, 38032270 - 38032176
Alignment:
| Q |
465 |
tggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtcta-----gtatacttttattgataacaaatttacactactccat |
554 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38032270 |
tggaaagtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtaatgtatacttttattgatagcaaatttacactactccat |
38032176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 742 - 826
Target Start/End: Complemental strand, 38032064 - 38031978
Alignment:
| Q |
742 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatattgccgtttgatattacaaa |
826 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38032064 |
aatactgatcgggtatgcactgagaaacatagatatgtgaagaataaactttcctcattgaataatattgccgtttaagattacaaa |
38031978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 742 - 806
Target Start/End: Complemental strand, 38003819 - 38003753
Alignment:
| Q |
742 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataata |
806 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38003819 |
aatactgatcgggtatgcactttgaaacatagatatgtgaagaataaactttcctcattgaataata |
38003753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University