View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_37 (Length: 309)
Name: NF10957_high_37
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38213936 - 38213635
Alignment:
| Q |
1 |
aagattgagatgggttcggaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213936 |
aagattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
38213837 |
T |
|
| Q |
101 |
ttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
38213836 |
ttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgt |
38213737 |
T |
|
| Q |
195 |
ctatcttagataacacgtgatcaaataaatcaaattctttgtagtttgtatcacttccttatcagttttcggtatattgagaacactatatataccctgt |
294 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213736 |
ctatcttagataacatgtgatcaaataaatcacattctttgtagtttgtaccacttccttatcagttttcggtatattgagaacactatatataccctgt |
38213637 |
T |
|
| Q |
295 |
tc |
296 |
Q |
| |
|
|| |
|
|
| T |
38213636 |
tc |
38213635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38218155 - 38217913
Alignment:
| Q |
1 |
aagattgagatgggttcggaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38218155 |
aagattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
38218056 |
T |
|
| Q |
101 |
ttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
38218055 |
ttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgt |
38217956 |
T |
|
| Q |
195 |
ctatcttagataacacgtgatcaaataaatcaaattctttgta |
237 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
38217955 |
ctattttagatagcacatgatcaaataaatcaaattctttgta |
38217913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 42991567 - 42991666
Alignment:
| Q |
1 |
aagattgagatgggttcggaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
100 |
Q |
| |
|
||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
42991567 |
aagattgagatgggttcagaagtatttcatgatatataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35018260 - 35018348
Alignment:
| Q |
1 |
aagattgagatgggttcggaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgta |
89 |
Q |
| |
|
||||||||||||||||| || || || ||||| ||||| || || || |||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
35018260 |
aagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatcttaagcgattcccacaaggtgttcctgttgagtgta |
35018348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
143 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
237 |
Q |
| |
|
||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University