View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_38 (Length: 307)
Name: NF10957_high_38
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 40945101 - 40944827
Alignment:
| Q |
19 |
ttggacgtgggttgtaaccggatttgcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactagga |
118 |
Q |
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| T |
40945101 |
ttggacgtgggttgtaaccggatttgcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactagga |
40945002 |
T |
|
| Q |
119 |
tttctactggcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagag |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945001 |
tttctactcgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagag |
40944902 |
T |
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| Q |
219 |
ccaaacgtgtattatccatagatactccaataggagttccttgaaaatttccaccatgcaaagctttgtttcttg |
293 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
40944901 |
ccaaacgtgtattatccatggatactccaataggcgttccttgaaagtttccaccatgcaaagctttgtttcttg |
40944827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 40959066 - 40958792
Alignment:
| Q |
19 |
ttggacgtgggttgtaaccggatttgcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactagga |
118 |
Q |
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| T |
40959066 |
ttggacgtgggttgtaaccggatttgcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactagga |
40958967 |
T |
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| Q |
119 |
tttctactggcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagag |
218 |
Q |
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| T |
40958966 |
tttctacttgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagag |
40958867 |
T |
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| Q |
219 |
ccaaacgtgtattatccatagatactccaataggagttccttgaaaatttccaccatgcaaagctttgtttcttg |
293 |
Q |
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| T |
40958866 |
ccaaacgtgtattatccatggatactccaataggcgttccttgaaattttccaccatgcaaagctttgtttcttg |
40958792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 276
Target Start/End: Original strand, 28184343 - 28184575
Alignment:
| Q |
44 |
gcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactaggatttctactggcagaaagatttgaag |
143 |
Q |
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||||||||||| ||||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||| || |||||||| |||| |||||| |||| |
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| T |
28184343 |
gcaagatattgtaactcggagcaataagaagccatagcaatttcagatcccttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaag |
28184442 |
T |
|
| Q |
144 |
gcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatagatac |
243 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || || || ||||| ||||| || || ||||| || || |
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| T |
28184443 |
gcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaacatgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaac |
28184542 |
T |
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| Q |
244 |
tccaataggagttccttgaaaatttccaccatg |
276 |
Q |
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| T |
28184543 |
tccgataggtgttccttgaaagttaccaccatg |
28184575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 276
Target Start/End: Original strand, 42609747 - 42609961
Alignment:
| Q |
62 |
gaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactaggatttctactggcagaaagatttgaaggcaatccattgttgtaaa |
161 |
Q |
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||||||||||| ||||| |||| ||| ||||| ||||| || ||||||||||| ||||| | || |||| ||| ||||||||||||| ||||| || | |
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| T |
42609747 |
gaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttataga |
42609846 |
T |
|
| Q |
162 |
aatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatagatactccaataggagttccttg |
261 |
Q |
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||||| |||||||||| ||||||||||||||||||||| ||||| | || | || ||||| || |||||||| ||||| ||||| || || ||||| |
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| T |
42609847 |
tgtcattcacaagctcagtgaattgagcaaacataagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttg |
42609946 |
T |
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| Q |
262 |
aaaatttccaccatg |
276 |
Q |
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| T |
42609947 |
gaaatttcctccatg |
42609961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 275
Target Start/End: Complemental strand, 43216829 - 43216592
Alignment:
| Q |
38 |
ggatttgcaagatattgcaactcagaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactaggatttctactggcagaaagat |
137 |
Q |
| |
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|||||||| | |||||| | ||||||||||| | ||||||||||| ||||| |||| ||||||||||||| ||| || ||||||| |||||||||| |
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| T |
43216829 |
ggatttgctaaatattgaagttcagaacaataagcagccatggcaacttcagaggccttaaaaccataatccagacttgggtttctaccagcagaaagat |
43216730 |
T |
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| Q |
138 |
ttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccat |
237 |
Q |
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|||| |||| |||||||| || || |||||||| | ||||| ||||| ||||| | ||||| |||||||| | | ||| |||||| ||||||||| |
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| T |
43216729 |
ttgacggcagcccattgttatacaagtcattgactaactcagtaaattgcgcaaagacgagttttccaattgaagtaacagctaaacgtacattatccat |
43216630 |
T |
|
| Q |
238 |
agatactccaataggagttccttgaaaatttccaccat |
275 |
Q |
| |
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|| |||||||| || || ||||| ||||| ||||||| |
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| T |
43216629 |
tgaaactccaattggggtgccttggaaattaccaccat |
43216592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 40549703 - 40549549
Alignment:
| Q |
134 |
agatttgaaggcaatccattgttgtaaaaatcattgacaagctcagagaattgagcaaaca-taagtttgccaattgatgcgagagccaaacgtgtatta |
232 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || | |||||| | ||||||||| | ||| ||| ||||| | || | ||| || | ||||||| |
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| T |
40549703 |
agatttgaaggcaaaccattgttgtaaaaatcattaaccaactcagacatttgagcaaaaagtaacttt-ccaatagcagccaaagctaatcttgtatta |
40549605 |
T |
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| Q |
233 |
tccatagatactccaataggagttccttgaaaatttccaccatgcaaagctttgtt |
288 |
Q |
| |
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|||||||| || ||||| || || |||||||| ||||||||||||||||||||||| |
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| T |
40549604 |
tccatagaaacaccaattggtgtaccttgaaagtttccaccatgcaaagctttgtt |
40549549 |
T |
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