View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_4 (Length: 809)
Name: NF10957_high_4
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 258 - 797
Target Start/End: Complemental strand, 48707584 - 48707045
Alignment:
| Q |
258 |
atactagctacatgattaccaaccgaccgaccttgttcttgatggatgctgtgattctccttaatactgttgatgtctttttcagcgggacatagttacg |
357 |
Q |
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| T |
48707584 |
atactagctacatgattaccaaccgaccgaccttgttcttgatggatgctgtgattctccttaatactgttgatgtctttttcagcgggacatagttacg |
48707485 |
T |
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| Q |
358 |
tttaagcatcaattctttgtttggatacttgagaaatgatccatatttctgatttgggattttagttgtacaagtacagttaacagccatcaagaaaaat |
457 |
Q |
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| T |
48707484 |
tttaagcatcaattctttgtttggatacttgagaaatgatccatatttctgatttgggattttagttgtacaagtacagttaacagccatcaagaaaaat |
48707385 |
T |
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| Q |
458 |
aaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatctcatcatgccattaaatgctaataaattcaatta |
557 |
Q |
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| T |
48707384 |
aaaagttctagaattggtgttgggtgggttgggctctgcctatatagtagtaacataataacgatctcatcatgccattaaatgctaataaattcaatta |
48707285 |
T |
|
| Q |
558 |
ttggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgcttatcccttacnnnnnnnccctgccggtgaagtg |
657 |
Q |
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| T |
48707284 |
ttggtggtttctgtcttatcattatgcattataattattattatagtcatgtggaaccaaagtcgcttatcccttactttttttccctgccggtgaagtg |
48707185 |
T |
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| Q |
658 |
aactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatcatttaatcaattgattcatcagtagcagtttatac |
757 |
Q |
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| T |
48707184 |
aactccaactcataattttgtttcattcttgatagtgcttctgtcttatcgatcatctattcatcatttaatcaattgattcatcagtagcagtttatac |
48707085 |
T |
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| Q |
758 |
ttcatacacggtattggtctaaaataagctagttcatctc |
797 |
Q |
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| T |
48707084 |
ttcatacacggtattggtctaaaataagccagttcatctc |
48707045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 48707843 - 48707660
Alignment:
| Q |
1 |
aaccttggaggaattggatattgataataggttggttttgaaattctttgaaagcaaggcccttcatcataaccttcacaaattatttctccatgctcat |
100 |
Q |
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| T |
48707843 |
aaccttggaggaattggatattgataatagattggttttgaaattctttgaaagcaaggcccttcatcataaccttcacaaattatttctccatgctcat |
48707744 |
T |
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| Q |
101 |
cttggtagcagactacaccctcaagctcagattcataaacctgttttaactgattagtcaaaattaatcatctgttttgtttat |
184 |
Q |
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| T |
48707743 |
cttggtagcagactacaccctcaggctcagattcataaacctgttttaactgattagtcaaaattaatcatctgttttgtttat |
48707660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 8259744 - 8259796
Alignment:
| Q |
58 |
ggcccttcatcataaccttcacaaattatttctccatgctcatcttggtagca |
110 |
Q |
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| T |
8259744 |
ggcccttcatcatacccttcacaaattatttctccactttcatcttggtagca |
8259796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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