View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_44 (Length: 294)
Name: NF10957_high_44
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 43195227 - 43194950
Alignment:
| Q |
1 |
attagtactgtagccactcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaag |
100 |
Q |
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| T |
43195227 |
attagtactgtagccactcactatggagttggtggatccgccgttaaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcttgaag |
43195128 |
T |
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| Q |
101 |
tagttgttgtcaaaagaagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactag |
200 |
Q |
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| T |
43195127 |
tagttgttgtcaaatgaagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgtatttgggcaatttgattgtcttgtactag |
43195028 |
T |
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| Q |
201 |
caaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgag |
278 |
Q |
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| T |
43195027 |
caaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcaccttgcttgtccaattgtgtgag |
43194950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 43180870 - 43180597
Alignment:
| Q |
3 |
tagtactgtagccactcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagta |
102 |
Q |
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| T |
43180870 |
tagtactataaccactcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttcttgaagta |
43180771 |
T |
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| Q |
103 |
gttgttgtcaaaagaagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagca |
202 |
Q |
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| T |
43180770 |
gttgttgtcaaaagaactaggagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgtgctagca |
43180671 |
T |
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| Q |
203 |
aatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtg |
276 |
Q |
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| T |
43180670 |
aatgcagcatttatgttggtctcgttgtagattcgtgccctaaaatttgtacaccttgcttgtccaattgtgtg |
43180597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 43190187 - 43189920
Alignment:
| Q |
11 |
tagccactcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgt |
110 |
Q |
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| T |
43190187 |
tagccactcactattgagttagtggacccgccgttgaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcctgtagtagcagttgt |
43190088 |
T |
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| Q |
111 |
caaaagaagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagt |
210 |
Q |
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| T |
43190087 |
caaaagaagtgggagtatggagatcaagaggtgccaaattgttgtcccctgatcctgatgtctttgggcaattagattgccttgtgctagcaaaagaagt |
43189988 |
T |
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| Q |
211 |
atctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgag |
278 |
Q |
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| T |
43189987 |
atctatgttggtctcattgtagattcgtaccctaaatgttgtgcaccttgcttgtccaattgtgtgag |
43189920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 36191264 - 36191006
Alignment:
| Q |
19 |
cactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaaagaa |
118 |
Q |
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| T |
36191264 |
cactatggaatcggtggatccaccattaaagagttgttggtcggagtggagtagtcccttactgtcaactaggttcttgaagtaatggttgtcaaaggat |
36191165 |
T |
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| Q |
119 |
gtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctatgt |
218 |
Q |
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| T |
36191164 |
gttggtgttgcaagatcaaggggtgccaaattattgtccccggaacccgatgtcttggggcaccctgattgccttgtgcgagcaaaggaagtatctatgt |
36191065 |
T |
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| Q |
219 |
tggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtga |
277 |
Q |
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| T |
36191064 |
tggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtga |
36191006 |
T |
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