View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_45 (Length: 290)
Name: NF10957_high_45
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_45 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 14415072 - 14414796
Alignment:
| Q |
1 |
tgattagtctaatgtaaatctcaccgtctgaattatataagtgtatcataacaataatgacatttgtcgatatgtcac---ggcctgtttactaagatca |
97 |
Q |
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| T |
14415072 |
tgattagtctaatgtaaatctcactgtctgaattatataagtgtatcataacaataatgacatttgtcgatatgccactacggcctgtttactaagatca |
14414973 |
T |
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| Q |
98 |
tcatagattattaatgtgtgcattccattatcgcggaaatattcccccatggcacacccagaatatggggccagaaattgcagaagtgcaggatccgaag |
197 |
Q |
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| T |
14414972 |
tcatagattattaatgtgtgcattccattatcgtggaaatattcccccatggcacacccagaatatggggccagaaattgcagaagtgcaggatccaaag |
14414873 |
T |
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| Q |
198 |
cggtggttgctacaagaatggaatattctaaagcattcgctttagaattcaaagaaatataaattatagtaccaaat |
274 |
Q |
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| T |
14414872 |
cggtggttgctacaagaatggaatattctaaagcattcgctttagaattcaaagaaatataaattatagtaccaaat |
14414796 |
T |
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Target: scaffold0212 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 15576 - 15766
Alignment:
| Q |
49 |
taacaataatgacatttgtcgatatgtcacggcctgtttactaagatcatcatagattattaatgtgtgcattccattatcgcggaaatattcccccatg |
148 |
Q |
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| T |
15576 |
taacaataatgacatttgtcgatatgccacggcctgtttactaagatcatcatagattattaatgcgtgcattccattatcgcggaaatattcccccatg |
15675 |
T |
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| Q |
149 |
gcacacccagaatatggggccagaaattgcagaagtgcaggatccgaagcggtggttgctacaagaatggaatattctaaagcattcgctt |
239 |
Q |
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| T |
15676 |
gcacacccagaatatggggccagaaattgcagaggtgcaggatccgaagcggtggctgctacaagaatggaatattctaaagcattcgctt |
15766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 36499618 - 36499526
Alignment:
| Q |
147 |
tggcacacccagaatatggggccagaaattgcagaagtgcaggatccgaagcggtggttgctacaagaatggaatattctaaagcattcgctt |
239 |
Q |
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| T |
36499618 |
tggcacacccagaatatggggccagaaattgcagaggtgcaggatccgaagcggtggctgctacaagaatggaatattctaaagcattcgctt |
36499526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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