View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_47 (Length: 279)
Name: NF10957_high_47
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_47 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 12682908 - 12682654
Alignment:
| Q |
15 |
tggtgttggtgttggtgtcggtttcggtgttggggttggtgtagtttcttgcggcgcttgttgctgctgaggaacaatggtactgttgttcaatacagga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12682908 |
tggtgttggtgttggtgtcggtttcggtgttggggttggtatagtttcttgcggcgcttgttgctgctgaggaacaatggtgctgttgttcaatacagga |
12682809 |
T |
|
| Q |
115 |
ggaacaagaatttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttggtagcagcaagagatctctcttgagcaagaa |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12682808 |
ggaacaagattttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttagtagcagcaagagatctctcttgagcaagaa |
12682709 |
T |
|
| Q |
215 |
tttccctttctctattaatcctttgcatctcttgcaacctccaagcttcttctct |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12682708 |
tttccctttctctattaatcctttgcatctcttgcaacctccaagcttcttctct |
12682654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 12682928 - 12682897
Alignment:
| Q |
1 |
gctggcaacggtactggtgttggtgttggtgt |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12682928 |
gctggcaacggtactggtgttggtgttggtgt |
12682897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 44553835 - 44553969
Alignment:
| Q |
135 |
ttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttggtagcagcaagagatctctcttgagcaagaatttccctttctctattaatc |
234 |
Q |
| |
|
||||||||| || || || ||||| |||| ||| || ||||||||||| | |||| | |||||| || || ||||| |||||||| |||||||| || |
|
|
| T |
44553835 |
ttgttgttcggctattttttgcaagaaagacatgactgcagcatcttttgctgcagttatagatctttcgtgtgcaagcatttccctctctctattgatt |
44553934 |
T |
|
| Q |
235 |
ctttgcatctcttgcaacctccaagcttcttctct |
269 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |
|
|
| T |
44553935 |
ctttgcatctcttgtgctctccacgcttcttctct |
44553969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University