View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_55 (Length: 261)
Name: NF10957_high_55
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_55 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 42445916 - 42446160
Alignment:
| Q |
5 |
gcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattg |
104 |
Q |
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| T |
42445916 |
gcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattg |
42446015 |
T |
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| Q |
105 |
cggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctgcagacacactaaatttagaaaacaaactcat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42446016 |
cggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctgcagacacactaaatttagaaaacaaactcat |
42446115 |
T |
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| Q |
205 |
tgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
249 |
Q |
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| T |
42446116 |
tgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 3207962 - 3207862
Alignment:
| Q |
56 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaat |
155 |
Q |
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| T |
3207962 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat |
3207863 |
T |
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| Q |
156 |
c |
156 |
Q |
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| T |
3207862 |
c |
3207862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 3179002 - 3179090
Alignment:
| Q |
68 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
156 |
Q |
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| T |
3179002 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 3239838 - 3239750
Alignment:
| Q |
68 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
156 |
Q |
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| T |
3239838 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 3201955 - 3201888
Alignment:
| Q |
89 |
catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
156 |
Q |
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| T |
3201955 |
catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
95 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
156 |
Q |
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| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 5725736 - 5725700
Alignment:
| Q |
51 |
atttcaacattatgtcaggcacatcaatgtcatgccc |
87 |
Q |
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| T |
5725736 |
atttcaacattatctcaggcacatccatgtcatgccc |
5725700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 68159 - 68220
Alignment:
| Q |
51 |
atttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
112 |
Q |
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| T |
68159 |
atttcaacattatctcaggcacatccatgtcatgccctcatgtaagtggattagcggctttg |
68220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 18214753 - 18214797
Alignment:
| Q |
124 |
tcatcctgattggtcaccagcagccataaaatctgccataatgac |
168 |
Q |
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| T |
18214753 |
tcatcctgattggtcacctgcagctataaaatctgctatcatgac |
18214797 |
T |
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