View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_high_64 (Length: 250)

Name: NF10957_high_64
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_high_64
NF10957_high_64
[»] chr5 (4 HSPs)
chr5 (26-131)||(14148612-14148717)
chr5 (26-131)||(18014716-18014821)
chr5 (26-131)||(39058371-39058476)
chr5 (52-117)||(24043053-24043120)
[»] chr4 (1 HSPs)
chr4 (26-131)||(24021291-24021396)
[»] chr8 (2 HSPs)
chr8 (26-131)||(3469492-3469597)
chr8 (26-131)||(42906199-42906304)
[»] chr3 (2 HSPs)
chr3 (26-131)||(30991335-30991440)
chr3 (26-117)||(93104-93195)
[»] chr1 (3 HSPs)
chr1 (26-131)||(46435882-46435987)
chr1 (26-131)||(35760738-35760843)
chr1 (32-128)||(29119718-29119817)
[»] chr6 (2 HSPs)
chr6 (29-119)||(3808195-3808285)
chr6 (96-128)||(9620293-9620325)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 14148612 - 14148717
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14148612 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 14148711  T
Q  126 ccagca 131  Q
    ||||||    
T  14148712 ccagca 14148717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 18014821 - 18014716
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18014821 aggggcggagccatgttggctcttgtgcaagcaagtgcctccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 18014722  T
Q  126 ccagca 131  Q
    ||||||    
T  18014721 ccagca 18014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 39058476 - 39058371
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39058476 aggggcggagcgatgttggctcttgtgcaagcaagtgcccccattaattttgaaatttttatatccatcctatataatactacatcatagatttccagca 39058377  T
Q  126 ccagca 131  Q
    ||||||    
T  39058376 ccagca 39058371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 24043120 - 24043053
Alignment:
Q  52 gcaagcaagtgcccccactaa--ttttaaaattttcatatccatcctatataatactacatcatagat 117  Q
    |||||||||||||||||||||  |||| | |||||  ||| ||||||| |||||||||| ||||||||    
T  24043120 gcaagcaagtgcccccactaattttttgagattttagtattcatcctacataatactacttcatagat 24043053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 24021291 - 24021396
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24021291 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 24021390  T
Q  126 ccagca 131  Q
    ||||||    
T  24021391 ccagca 24021396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 3469597 - 3469492
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3469597 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 3469498  T
Q  126 ccagca 131  Q
    ||||||    
T  3469497 ccagca 3469492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 42906199 - 42906304
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42906199 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaatttttaaattttcatatccatcctatataatactacatcatagatttccagca 42906298  T
Q  126 ccagca 131  Q
    ||||||    
T  42906299 ccagca 42906304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 30991335 - 30991440
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30991335 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 30991434  T
Q  126 ccagca 131  Q
    ||||||    
T  30991435 ccagca 30991440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 93104 - 93195
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  93104 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagat 93195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 46435987 - 46435882
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46435987 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 46435888  T
Q  126 ccagca 131  Q
    ||||||    
T  46435887 ccagca 46435882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 35760843 - 35760738
Alignment:
Q  26 aggggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagatttccagca 125  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35760843 aggggcggagccatgttggctcttgtacaagcaagtgcccccactaattttgaaattttcatatccatcctatataatactacatcatagatttccagca 35760744  T
Q  126 ccagca 131  Q
    ||||||    
T  35760743 ccagca 35760738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 29119817 - 29119718
Alignment:
Q  32 ggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatat---aatactacatcatagatttccagcacca 128  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||| ||||    
T  29119817 ggagccatgttggcttttgtgcaagcaagtgcccccactaattttgaaattttcatatccatcctatataataatactacatcatagatttccagaacca 29119718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 3808285 - 3808195
Alignment:
Q  29 ggcggagccatgttggctcttgtgcaagcaagtgcccccactaattttaaaattttcatatccatcctatataatactacatcatagattt 119  Q
    |||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  3808285 ggcggagccatgttcgctcttgtgcaagcatgtgccaccacaaattttgaaattttcatatccatcctatataatactatatcaaagattt 3808195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 9620293 - 9620325
Alignment:
Q  96 tatataatactacatcatagatttccagcacca 128  Q
    |||||||||||||||||||||| ||||||||||    
T  9620293 tatataatactacatcatagatctccagcacca 9620325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University