View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_high_70 (Length: 242)
Name: NF10957_high_70
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_70 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 4804154 - 4803929
Alignment:
| Q |
17 |
agatatgtatgggagtccaacaataacagtcattgtatttagatgtccatccattcaagcagctgtcgttgatagagcaatgcagccttgatatatatct |
116 |
Q |
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| T |
4804154 |
agatatgtaagggagtccaataataacagtcattgtatttagatgtccatccattcaagcagctgtcgttgatagagcaatgcagccttgatatatatct |
4804055 |
T |
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| Q |
117 |
cgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgactt |
216 |
Q |
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| T |
4804054 |
cgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgtctt |
4803955 |
T |
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| Q |
217 |
caacattgatgttgaaaaacatgtct |
242 |
Q |
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| T |
4803954 |
caacactgatgttgaaaaacatgtct |
4803929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 10779451 - 10779321
Alignment:
| Q |
111 |
atatctcgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtacct |
210 |
Q |
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| T |
10779451 |
atatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgtagtaaagtaatgtcgcagcaag-acct |
10779353 |
T |
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| Q |
211 |
tgacttcaacattgatgttgaaaaacatgtct |
242 |
Q |
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| T |
10779352 |
tttcttcagcactgatgttgaaaaacatgtct |
10779321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 4819657 - 4819526
Alignment:
| Q |
111 |
atatctcgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtacct |
210 |
Q |
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| T |
4819657 |
atatctcgaaatcgcgtattgcagtgtggcacaacaatcaagttcctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggcaagagctt |
4819558 |
T |
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| Q |
211 |
tgacttcaacattgatgttgaaaaacatgtct |
242 |
Q |
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| T |
4819557 |
tttcttcagcattcaagttgaaaaacatgtct |
4819526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 4797949 - 4798043
Alignment:
| Q |
147 |
atcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgacttcaacattgatgttgaaaaacatgtc |
241 |
Q |
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| T |
4797949 |
atcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtc |
4798043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 4824531 - 4824480
Alignment:
| Q |
147 |
atcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcg |
198 |
Q |
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| T |
4824531 |
atcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcg |
4824480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 4835756 - 4835691
Alignment:
| Q |
175 |
tgatgatgtagtaaagcaatgtcgatgcaagtaccttgacttcaacattgatgttgaaaaacatgt |
240 |
Q |
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| T |
4835756 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt |
4835691 |
T |
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