View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_high_81 (Length: 228)
Name: NF10957_high_81
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_high_81 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 33463618 - 33463420
Alignment:
| Q |
18 |
aaataaagttccaaaaactctatacatcaagcaatttatgtttaccttgtgcattatctggttcttctatggcttcttcagtactattatcaccattcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33463618 |
aaataaagttccaaaaactctatacatcaagcaatttatgtttaccttgtgcattatctggttcttctatggcttcttcagtactattatcaccattcac |
33463519 |
T |
|
| Q |
118 |
agaaatttgaagtactgaattctgatttagcccttcaacttctaaggttatagaattttccaaactttcttcaaattccctcatgtttgttttctctgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33463518 |
agaaatttgaagtactgaattctgatttagcccttcaacttctaaggttatagaattttccaaactttcttcaagttccctcatgtttgttttctctgc |
33463420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University