View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_high_84 (Length: 225)

Name: NF10957_high_84
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_high_84
NF10957_high_84
[»] chr1 (10 HSPs)
chr1 (1-213)||(949328-949540)
chr1 (1-213)||(960300-960512)
chr1 (1-213)||(971609-971821)
chr1 (1-213)||(942339-942551)
chr1 (23-210)||(936422-936609)
chr1 (18-210)||(909672-909861)
chr1 (11-204)||(419737-419927)
chr1 (11-204)||(975234-975424)
chr1 (84-179)||(916185-916280)
chr1 (18-179)||(924236-924394)
[»] scaffold0312 (1 HSPs)
scaffold0312 (11-204)||(10644-10834)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 949540 - 949328
Alignment:
Q  1 cacaatagtattgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagct 100  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  949540 cacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagct 949441  T
Q  101 tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  949440 tcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 949341  T
Q  201 cacttattgttct 213  Q
    |||||||||||||    
T  949340 cacttattgttct 949328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 960512 - 960300
Alignment:
Q  1 cacaatagtattgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagct 100  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  960512 cacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagct 960413  T
Q  101 tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960412 tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 960313  T
Q  201 cacttattgttct 213  Q
    |||||||||||||    
T  960312 cacttattgttct 960300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 971821 - 971609
Alignment:
Q  1 cacaatagtattgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagct 100  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  971821 cacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgttgaaacagct 971722  T
Q  101 tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  971721 tcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacact 971622  T
Q  201 cacttattgttct 213  Q
    |||||||||||||    
T  971621 cacttattgttct 971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 942551 - 942339
Alignment:
Q  1 cacaatagtattgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagct 100  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  942551 cacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagct 942452  T
Q  101 tcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacact 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  942451 tcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacact 942352  T
Q  201 cacttattgttct 213  Q
    |||||||||||||    
T  942351 cacttattgttct 942339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 936609 - 936422
Alignment:
Q  23 cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg 122  Q
    |||||||| ||||| |||||||| || ||||||| ||||||  || | || | ||| | ||||||||| |||| |||||| ||||||||||| |||||||    
T  936609 cccaatttcttcacaccttttgccattacatattcttgcaagtcactgctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcg 936510  T
Q  123 aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgt 210  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  936509 aagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttgatgccattttcttcacactcacttattgt 936422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 909861 - 909672
Alignment:
Q  18 tctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgag 117  Q
    |||| |||| ||| |||||||| |||||||| ||||||||||| ||||||   || | |  ||  |||||||| |||| ||  |||||||||||||| ||    
T  909861 tctctcccattttcttcactccgtttgctattacatattgttgtaaacca---ctttctccatttacttctgttgaaacagtgtcaacattgtttccaag 909765  T
Q  118 tttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgt 210  Q
     ||| || |||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||||||    
T  909764 cttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttgataccatatgcttcacattcacttattgt 909672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 419737 - 419927
Alignment:
Q  11 ttgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgt 110  Q
    |||||| |||||||||| || ||||||||   ||||||   ||||||||| |||   ||||| | ||| | ||||||||| |||| ||| |||||||| |    
T  419737 ttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcacttctgttgaaacagcctcaacatttt 419833  T
Q  111 ttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcact 204  Q
    | || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || |   |||||||||||||    
T  419834 taccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcact 419927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 975424 - 975234
Alignment:
Q  11 ttgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgt 110  Q
    |||||| |||||||||| || ||||||||   ||||||   ||||||||| |||   ||||| | ||| | ||||||||| |||| ||| |||||||| |    
T  975424 ttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcacttctgttgaaacagcctcaacatttt 975328  T
Q  111 ttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcact 204  Q
    | || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || |   |||||||||||||    
T  975327 taccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcact 975234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 916280 - 916185
Alignment:
Q  84 cttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 179  Q
    ||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| |||||||||  ||||||||| ||||    
T  916280 cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 924394 - 924236
Alignment:
Q  18 tctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgag 117  Q
    |||||||||| || || |||||||||||||| | ||||||||| | | ||   || | ||| | ||||||||| |||| |||||||||||||||||| ||    
T  924394 tctcacccaacttcttaactccttttgctattatatattgttgtatatca---ctttctttgttcacttctgttgaaacagcttcaacattgtttccaag 924298  T
Q  118 tttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 179  Q
     || ||| |||||||||||||||| || || ||||| |||||||||  ||||||||| ||||    
T  924297 cttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 10834 - 10644
Alignment:
Q  11 ttgttcatctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgt 110  Q
    |||||| |||||||||| || ||||||||   ||||||   ||||||||| |||   ||||| | ||| | ||||||||| |||| ||| |||||||| |    
T  10834 ttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcacttctgttgaaacagcctcaacatttt 10738  T
Q  111 ttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcact 204  Q
    | || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| || |   |||||||||||||    
T  10737 taccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcact 10644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University