View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_high_88 (Length: 209)

Name: NF10957_high_88
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_high_88
NF10957_high_88
[»] chr5 (2 HSPs)
chr5 (10-121)||(35305350-35305463)
chr5 (118-155)||(21255907-21255944)
[»] chr1 (3 HSPs)
chr1 (26-121)||(9906561-9906661)
chr1 (26-121)||(18703772-18703870)
chr1 (118-155)||(18703882-18703919)
[»] chr7 (2 HSPs)
chr7 (26-121)||(7734612-7734704)
chr7 (79-121)||(41831942-41831984)
[»] chr4 (1 HSPs)
chr4 (26-121)||(5444036-5444128)
[»] chr8 (3 HSPs)
chr8 (84-121)||(29865087-29865124)
chr8 (79-121)||(7275901-7275943)
chr8 (79-121)||(26174760-26174802)
[»] scaffold1412 (1 HSPs)
scaffold1412 (79-121)||(542-584)
[»] scaffold0001 (1 HSPs)
scaffold0001 (79-121)||(145401-145443)
[»] chr6 (1 HSPs)
chr6 (79-121)||(6823813-6823855)
[»] chr2 (3 HSPs)
chr2 (79-121)||(31270221-31270263)
chr2 (118-149)||(24038752-24038783)
chr2 (79-120)||(24038796-24038837)
[»] scaffold0525 (1 HSPs)
scaffold0525 (79-121)||(6682-6724)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 35305350 - 35305463
Alignment:
Q  10 gagcagagacaaaaggaaccaaatgcaaccggtaaactacagggcatgtcaaca--aacaaagaaacaaggagccaatggagaggcatagccatgtgatg 107  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||  ||||||  ||||| |||||||| |||| |||||||||||  |||    
T  35305350 gagccgagacaaaaagaaccaaatgaaacctgtaaactacagggcatgtcaacagcaacaaaagaacaatgagccaatagagatgcatagccatgcaatg 35305449  T
Q  108 tgtcttcaaaccat 121  Q
    ||||||||||||||    
T  35305450 tgtcttcaaaccat 35305463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 21255944 - 21255907
Alignment:
Q  118 ccatgttgatgcattcaaaccataggtcaaaatcaatg 155  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  21255944 ccatgttgatgcattcaaaccataggccaaaaccaatg 21255907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 9906561 - 9906661
Alignment:
Q  26 aaccaaatgcaaccggtaaactacagggcatgt-----caacaaacaaagaaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaacca 120  Q
    |||||||||||||| ||| ||||||||||||||     ||||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9906561 aaccaaatgcaacctgtatactacagggcatgtaacagcaacaaaaaaaaaaacaaggagccaatggagatgcatagccatgtgatatgtcttcaaacca 9906660  T
Q  121 t 121  Q
    |    
T  9906661 t 9906661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 18703772 - 18703870
Alignment:
Q  26 aaccaaatgcaaccggtaaactacagggcatgtcaacaa--acaa-agaaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    |||||||||||||| |||  |||||||||||||||||||  |||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  18703772 aaccaaatgcaacctgtatgctacagggcatgtcaacaacaacaacaaaaacaaggagccaatagagatgcatagccatgtgatgtgtcttcaaaccat 18703870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 18703882 - 18703919
Alignment:
Q  118 ccatgttgatgcattcaaaccataggtcaaaatcaatg 155  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18703882 ccatgttgatgcattcaaaccataggccaaaaccaatg 18703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 7734704 - 7734612
Alignment:
Q  26 aaccaaatgcaaccggtaaactacagggcatgtcaacaaacaaagaaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||| |||    || |||||||||| ||||||||||||||||||||||||||||||    
T  7734704 aaccaaaagcaacctgtaaactacagggcatgtcaaaaaaaaaaaaaaa---gatccaatggagatgcatagccatgtgatgtgtcttcaaaccat 7734612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 41831984 - 41831942
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  41831984 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 41831942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 5444128 - 5444036
Alignment:
Q  26 aaccaaatgcaaccggtaaactacagggcatgtcaa---caaacaaagaaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    |||||||||||||  ||| |||||||||||||||||   |||||||| |||||||||||||||      |||| |||||||||||||||||||||||||    
T  5444128 aaccaaatgcaacttgtatactacagggcatgtcaacagcaaacaaaaaaacaaggagccaat------gcatggccatgtgatgtgtcttcaaaccat 5444036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 29865087 - 29865124
Alignment:
Q  84 atggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29865087 atggagaggcatagccatgtgatgtgtcttcaaaccat 29865124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 7275901 - 7275943
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  7275901 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 7275943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 26174802 - 26174760
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||    
T  26174802 agccaatagagatgcatagccatgtgatatgtcttcaaaccat 26174760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 542 - 584
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  542 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 145401 - 145443
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  145401 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 145443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 6823813 - 6823855
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  6823813 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 6823855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 31270221 - 31270263
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  31270221 agccaatcgagatgcatagccatgtgatgtgtcttcaaaccat 31270263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 24038783 - 24038752
Alignment:
Q  118 ccatgttgatgcattcaaaccataggtcaaaa 149  Q
    ||||||||||||||||||||||||||||||||    
T  24038783 ccatgttgatgcattcaaaccataggtcaaaa 24038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 24038837 - 24038796
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaacca 120  Q
    ||||||| |||| |||||||||||||| ||||||||||||||    
T  24038837 agccaatagagatgcatagccatgtgaggtgtcttcaaacca 24038796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 6682 - 6724
Alignment:
Q  79 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 121  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  6682 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 6724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University