View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_11 (Length: 693)
Name: NF10957_low_11
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 9722935 - 9723135
Alignment:
| Q |
1 |
agatgggaatgttggtgaggatagtggtggagtttatggtcatggagttggagttccatcttctatgatgatgatgatgggacataatatgtatggatct |
100 |
Q |
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| T |
9722935 |
agatgggaatgttggtgagggtagtggtggagtttatggtcatggagttggagttccatcttctatgatgatgatgatgggacataatatgtatggatct |
9723034 |
T |
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| Q |
101 |
gggagtggatcaccatcttctggaaggagtactcgatagcagagactaatctctcgagtcagataagatcataatgagcaggaaacttctgtcttaagaa |
200 |
Q |
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| T |
9723035 |
gggagtggatcgccatcttctggaaggagtactcgatagcagagactaatctctcgagtcagataagatcataatgagcagaaaacttctgtcttaagaa |
9723134 |
T |
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| Q |
201 |
t |
201 |
Q |
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| |
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| T |
9723135 |
t |
9723135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 458 - 563
Target Start/End: Original strand, 9723709 - 9723814
Alignment:
| Q |
458 |
ttatatacacctacttctttgttacattgatcatatacttcttttaattagaaactagactatgaatttattgaagaacccattgatgttagaattgagt |
557 |
Q |
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| T |
9723709 |
ttatatacacctacttctttgttacattgatcatatacgtcctttaattagaaactagactatgaatttattgaagaacccattgatgttagaattgagt |
9723808 |
T |
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| Q |
558 |
agctaa |
563 |
Q |
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|||||| |
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| T |
9723809 |
agctaa |
9723814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 9723271 - 9723353
Alignment:
| Q |
293 |
tagatatattgttgcaatttaatttgttgttgagggtacagtg-aacattatggatggtggtttggaattaatgcaaaaagta |
374 |
Q |
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| T |
9723271 |
tagatatattgttgcaatttaatttgttgttgagggtacagtgaaacattatggatggtggtttggaattaatgcaaaaagta |
9723353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 679
Target Start/End: Original strand, 9723821 - 9723861
Alignment:
| Q |
639 |
ttattaattggtatgttttgatcacacaataggttggtctt |
679 |
Q |
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| T |
9723821 |
ttattaattggtatgttttgatcacacaataggttggtctt |
9723861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 9723138 - 9723203
Alignment:
| Q |
231 |
gaactcaagacctatgattaaactaaaagaaatccgagtcatctcatctaaatacttttggttaga |
296 |
Q |
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| T |
9723138 |
gaactcaaaatctataattaaaccgaaagaaatcggagtcatctcatctaaatactcttggctaga |
9723203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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