View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_14 (Length: 525)
Name: NF10957_low_14
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_14 |
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| [»] scaffold1808 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 40692999 - 40692570
Alignment:
| Q |
1 |
agaggcaaggtatattcaagtatggtgtatttgcgtatactctgcgtataacctaaacttctgtgtactataaaataaatactataggtatgtataatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40692999 |
agaggcaaggtatattcaagtatggtgtatttgcgtatactctgcgtataacctaaacttctgtgtactataaaataaaaactataggtatgtataatct |
40692900 |
T |
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| Q |
101 |
aaaagcaaagagtgcttcaacagaaagcatttttcaactgcaagtatggcagtagctacacaagcaagctctctataatgacactacaaagag----nnn |
196 |
Q |
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| T |
40692899 |
aaaagcaaagagtgcttcaacagaaagcatttttcaactgcaagtatggcagtagctacacaagcaagctctctataatgacactacaaagaggtttttt |
40692800 |
T |
|
| Q |
197 |
nnnnnnaatgaaatcaaaatttgaaaatgatatatatgatactgtgaaccaagaaatatgcatgtatgtattatttttaaataaaacaagaggttaaata |
296 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40692799 |
ttttttaatgagatcaaaatttgaaaaagatatatatgatactgtgaaccaagaaatatgcatgtatgtattatttttaaataaaacaagaggttaaata |
40692700 |
T |
|
| Q |
297 |
tgattgatgaagtctccgtgagcataactcagttgcagagacatacatattgttatatgcagaggctggggttcgaatccggacacgccgctttaaaaaa |
396 |
Q |
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|| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
40692699 |
tggttgatgaaatctccgtgaacataactcagttgcagagacatacatattgttatatgcagaggctgaggttcgaacccggacacgccgcttaaaaaaa |
40692600 |
T |
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| Q |
397 |
atatatggtttagaaaaaagagtagaagaa |
426 |
Q |
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| T |
40692599 |
atatacggtttaggaaaaagagtagaagaa |
40692570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 40692544 - 40692491
Alignment:
| Q |
449 |
gtgagtaagtctctagcattatctatactactagtatagtatgatgtcactagaataac |
507 |
Q |
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| T |
40692544 |
gtgagtaagtctctagcattatcta-----ctagtatagtatgatgtcactagaataac |
40692491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 10442878 - 10442946
Alignment:
| Q |
307 |
agtctccgtgagcataactcagttgcagagacatacatattgttatatgcagaggctggggttcgaatcc |
376 |
Q |
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| T |
10442878 |
agtcaccgtgagcataactcagttg-atagagatatacattgttatatgtaggggttggggttcgaatcc |
10442946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 930 - 881
Alignment:
| Q |
312 |
ccgtgagcataactcagttg-cagagacatacatattgttatatgcagaggc |
362 |
Q |
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| T |
930 |
ccgtgagcataactcagttgtcagggacatac--attgttatatgcagaggc |
881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 3461826 - 3461761
Alignment:
| Q |
307 |
agtctccgtgagcataactcagttg-cagagacatacatattgttatatgcagaggctggggttcgaa |
373 |
Q |
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| T |
3461826 |
agtctccgtgagcataactcagttgacagggacatgc--attgttatatgtaggggttggggttcgaa |
3461761 |
T |
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