View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_low_15 (Length: 522)
Name: NF10957_low_15
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 46833671 - 46833201
Alignment:
| Q |
18 |
tgctctttgtagcttcttccttatagcaagtgcttctctatcaacaactttcatagcatagaaacactgaggcaaaccaactacagggttccttatctga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46833671 |
tgctctttgtagcttcttccttatagcaagtgcttctctatcaacaactttcatagcatagaaacactgaggcaaaccaactacagggttccttatctga |
46833572 |
T |
|
| Q |
118 |
caaagataaacattccctatatcgccgcttccaagccgcttaaggaggcggaaatggtcgagtccgactcgaccttggtcaagccggagtcgactcatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46833571 |
caaagataaacattccctatatcgccgcttccaagccgcttaaggaggcggaaatggtcgagtccgactcgaccttggtcaagccggagtcgactcatag |
46833472 |
T |
|
| Q |
218 |
cctcccatgcaacttggtttgccttatgaggcttagcgttggaacctaatacggaagaggtgtatgtggtggtggaagaaacggagacagagcttcgacg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46833471 |
cctcccatgcaacttggtttgccttatgaggcttagcgttggaacctaatactgaagaggtgtatgtggtggtggaagaaacggagacggagcttcgacg |
46833372 |
T |
|
| Q |
318 |
gcggcggcttccgaagctgaggttactcatccagctgcgggttgattcaggtacggtgatggatgaggagctgctgtcgtagtcaggttcaatatctatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46833371 |
gcggcggcttccgaagctgaggttactcatccagctgcgggttgattcaggtacggtgatggatgaggagctgctgtcgtagtcaggttcaatatctatg |
46833272 |
T |
|
| Q |
418 |
taaggtttggacttggtgatggtagccatggtaagtgctaggtaacatgtacgtgtgagtgagtgagagag |
488 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46833271 |
taaggtttggacttggtgatggtggccatggtaagtgctaggtaacatgtacgtgtgagtgagtgagagag |
46833201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University