View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_19 (Length: 470)
Name: NF10957_low_19
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 835373 - 834913
Alignment:
| Q |
11 |
caaaggccagtagatgtaagaattacaaattcattccatgtattagtgattgagaggagcaatatattactaatagtactatttgtta------------ |
98 |
Q |
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| T |
835373 |
caaaggccagtagatgtaagaattacaaattcattccatgtattagtgattgagaggagcaatatattactaacagtactatttgttagaaaagacttta |
835274 |
T |
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| Q |
99 |
----tgctaggtatcaataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaaaaagaactcatatatccagaatc |
194 |
Q |
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| T |
835273 |
ggtatgctaggtatcaataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaaaaagaactcatatatccagaatc |
835174 |
T |
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| Q |
195 |
aaccaatttgaaattatggcaagtcacaaaaggagnnnnnnntctannnnnnnagtatgaatcgaacttggtaccacggggtttacattgaatcccagta |
294 |
Q |
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| T |
835173 |
aaccaatttgaaattatggcaagtcacaaaaggagaaaaaaatctatttttttagtatgaatcgaacttggtaccacggggtttacattgaatcccagta |
835074 |
T |
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| Q |
295 |
ttggcatatatgcacattat--nnnnnnntcaaaacacatctaattccacagtctgtatcctgaaaaagtgtgctaattttggcattagttcttagttta |
392 |
Q |
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| T |
835073 |
ttggcatatatgcacattataaaaagaaatcaaaacatatctaattccacagtttgtat-ctgaaaaagtgtgctaattttggcattagttcttagttta |
834975 |
T |
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| Q |
393 |
gcatgataacaacaatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaat |
454 |
Q |
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| T |
834974 |
gcatgataacaacaatatacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaat |
834913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 411
Target Start/End: Complemental strand, 813338 - 813248
Alignment:
| Q |
322 |
tcaaaacacatctaattccacagtctgtatcctgaaaaa-gtgtgctaattttggcattagttcttagtttagcatgataacaacaatata |
411 |
Q |
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| T |
813338 |
tcaaaacacatctaattccacattttgtatcctaaaaaaagtatgctaattttagtattagttctgagtttagcatgataacaacaatata |
813248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 813547 - 813443
Alignment:
| Q |
111 |
ataccaatcattgtgcagaacattccaagagaagttctattgtatatctaaagttatgaaa-aaagaactcatatatccagaatcaaccaatttgaaatt |
209 |
Q |
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| T |
813547 |
ataccaattattgtgcagaacattcctagagaggatctagtgtata--taacgttatgaaagaaagaagtgatgtatccagaatcaaccaatttgaaact |
813450 |
T |
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| Q |
210 |
atggcaa |
216 |
Q |
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|| |||| |
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| T |
813449 |
attgcaa |
813443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 813628 - 813597
Alignment:
| Q |
20 |
gtagatgtaagaattacaaattcattccatgt |
51 |
Q |
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| T |
813628 |
gtagatgtaagaattacaaattcattccatgt |
813597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 813403 - 813350
Alignment:
| Q |
248 |
agtatgaatcgaacttggtaccacggggtttacattgaatcccagtattggcata |
302 |
Q |
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| T |
813403 |
agtatgaatcgaacttggcaccac-gagtttacattgaatcccaatcttggcata |
813350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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