View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_22 (Length: 434)
Name: NF10957_low_22
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 52858105 - 52858543
Alignment:
| Q |
1 |
tgattgagttagtggaactgaacaaagcagagtgatagttgtttgtacaggtggtaatttgtcaccattcataaccatccaagtgtctcattgtaaaaaa |
100 |
Q |
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| T |
52858105 |
tgattgagttagtggaactgaacaaagcagagtgatagttgtttgtacaagtggtaatttgtcaccattcataaccatccaagtgtctcattgtaaattt |
52858204 |
T |
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| Q |
101 |
tttattaaaaatggtaaattatatcttttttgatnnnnnnnn-----tgataatttataatactagcaaaaattttggaattttgattttaaaattgaat |
195 |
Q |
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| T |
52858205 |
tttattaaaaatggtaaattatatcttttttgataaaaataaaaaaatgataatttataatactagcaaaaattttggaattttgattttaaaattgaat |
52858304 |
T |
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| Q |
196 |
aaacaaaattaaatctaactgattattcataataatatagaaatggttttgatnnnnnnnn---tattaatataaaaattatgacgccatgtcaatgaaa |
292 |
Q |
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| T |
52858305 |
aaacaaaattaaatctaactgattattcataataatatagaaatggttttgataaaaaaaaaaatattaatataaaaattatgacgccatgtcaatgaaa |
52858404 |
T |
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| Q |
293 |
atggctatgtggcaatgttgtccataacttttgttagtctagttggcataaatttgataggagagactgataaataaccaaatgtttcaatccaggtgtc |
392 |
Q |
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| T |
52858405 |
atggctatgtggcaatgttgtccataacttttgttagtctagttagcataaatttgataggagagactgataaataaccaaatgtttcaatccaggtgtc |
52858504 |
T |
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| Q |
393 |
attgttgacccttaactttatttgttttccattaaaattaat |
434 |
Q |
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| T |
52858505 |
a---ttgaccctcaactttatttgttttccattaaaattaat |
52858543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 52858643 - 52858676
Alignment:
| Q |
401 |
cccttaactttatttgttttccattaaaattaat |
434 |
Q |
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| T |
52858643 |
cccttaattttatttgttttccattaaaattaat |
52858676 |
T |
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