View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_low_24 (Length: 418)
Name: NF10957_low_24
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 43498115 - 43497950
Alignment:
| Q |
64 |
tcttagtctatttataatcccttaataaaattggctctgtgggtacgaatctaggaattcccttttgcagtggtctgtccttctgactgataattcaaat |
163 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| || |||| || |||||||||||| ||||| ||||||| ||||| |||| ||||||||||||| |
|
|
| T |
43498115 |
tcttagtctctttataattccttaataaaattggctttgcaggtatgactctaggaattccattttggagtggtccgtcctgctgattgataattcaaat |
43498016 |
T |
|
| Q |
164 |
cgcaggtatgctaaatttggaaaggatttgtaagagctaacttatgctatgttattatctttgtat |
229 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
43498015 |
cgcaggtatgctaaaattggaatgtttttttaagagctaacttatgctatactatgatctttgtat |
43497950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 50610239 - 50610074
Alignment:
| Q |
64 |
tcttagtctatttataatcccttaataaaattggctctgtgggtacgaatctaggaattcccttttgcagtggtctgtccttctgactgataattcaaat |
163 |
Q |
| |
|
||||| ||| |||||| | ||||||||||||||||| || |||| || |||||||||||| ||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
50610239 |
tcttactctctttatagttccttaataaaattggctttgcaggtatgattctaggaattccattttggagtggtctgtcctgctgattgataattcaaat |
50610140 |
T |
|
| Q |
164 |
cgcaggtatgctaaatttggaaaggatttgtaagagctaacttatgctatgttattatctttgtat |
229 |
Q |
| |
|
||||||||||||||| |||||| || | | | |||||| |||||||||| || | |||||||||| |
|
|
| T |
50610139 |
cgcaggtatgctaaaattggaatggttgtcttagagcttacttatgctagattttgatctttgtat |
50610074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 50603773 - 50603655
Alignment:
| Q |
87 |
aataaaattggctctgtgggtacgaatctaggaattcccttttgcagtggtctgtccttctgactgataattcaaatcgcaggtatgctaaatttggaaa |
186 |
Q |
| |
|
||||||||||||| || |||| || |||||||||||| ||||| ||| | |||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
50603773 |
aataaaattggctttgcaggtatgactctaggaattccattttggagtagactgtccttctgattgataattcaaatcgcaggtatgctaaa-ttggaat |
50603675 |
T |
|
| Q |
187 |
ggatttgtaagagctaactt |
206 |
Q |
| |
|
|| ||| ||||||||||||| |
|
|
| T |
50603674 |
ggttttttaagagctaactt |
50603655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 10476580 - 10476490
Alignment:
| Q |
286 |
gtacaatagtgaactctaaggtagcatacagcagattaaagtaaactagtctaagctaagctaatattgagttacttgatagacaagctaa |
376 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
10476580 |
gtacaatagtagaatctaaggtagcatacagcagatcaaagcaaactggtctaagctcggctaatcatgagttacttgatggacaagctaa |
10476490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 44409703 - 44409750
Alignment:
| Q |
364 |
atagacaagctaactcaatcaattgtattgttgacttccttcttctca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44409703 |
atagacaagctaactcaatcaattgtattgttgacttccttcatctca |
44409750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 10476663 - 10476628
Alignment:
| Q |
230 |
ataccatattatgaagtaaacaaattgtgtattagc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10476663 |
ataccatattatgaagtaaacaaattgtgtattagc |
10476628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 10490932 - 10490870
Alignment:
| Q |
318 |
agattaaagtaaactagtctaagctaagctaatattgagttacttgatagacaagctaactca |
380 |
Q |
| |
|
|||| |||| ||||| ||||||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10490932 |
agatcaaagcaaactggtctaagttaggctaataatgagttacttgaaggacaagctaactca |
10490870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University