View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_low_33 (Length: 359)

Name: NF10957_low_33
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_low_33
NF10957_low_33
[»] chr1 (20 HSPs)
chr1 (7-251)||(46435380-46435624)
chr1 (90-359)||(2568932-2569209)
chr1 (99-251)||(29119331-29119495)
chr1 (7-89)||(27055723-27055806)
chr1 (7-89)||(35760418-35760501)
chr1 (7-67)||(29119266-29119326)
chr1 (99-251)||(32676136-32676300)
chr1 (23-89)||(46835191-46835257)
chr1 (9-88)||(12458402-12458479)
chr1 (27-88)||(36017987-36018048)
chr1 (38-89)||(3979692-3979743)
chr1 (27-90)||(27787426-27787489)
chr1 (23-89)||(32708970-32709034)
chr1 (190-247)||(7214521-7214578)
chr1 (23-87)||(26213955-26214019)
chr1 (196-251)||(8809756-8809811)
chr1 (192-250)||(16679811-16679868)
chr1 (190-251)||(25161309-25161370)
chr1 (88-159)||(35534507-35534578)
chr1 (90-159)||(35998357-35998426)
[»] chr8 (17 HSPs)
chr8 (7-89)||(3469176-3469258)
chr8 (7-89)||(42906862-42906944)
chr8 (89-251)||(24337827-24338001)
chr8 (97-251)||(41179568-41179734)
chr8 (90-191)||(11254026-11254127)
chr8 (10-89)||(30805981-30806058)
chr8 (23-84)||(34347447-34347508)
chr8 (43-86)||(1271303-1271346)
chr8 (192-250)||(32825947-32826005)
chr8 (113-191)||(4708328-4708406)
chr8 (297-332)||(12954835-12954870)
chr8 (197-244)||(18168392-18168439)
chr8 (100-159)||(18168490-18168549)
chr8 (197-244)||(18631949-18631996)
chr8 (100-159)||(18632047-18632106)
chr8 (294-333)||(24733277-24733316)
chr8 (217-251)||(1514803-1514837)
[»] chr5 (26 HSPs)
chr5 (7-89)||(14148950-14149032)
chr5 (91-251)||(19357261-19357432)
chr5 (24-89)||(39058055-39058120)
chr5 (7-89)||(18014398-18014481)
chr5 (88-251)||(1826259-1826434)
chr5 (90-246)||(33858536-33858704)
chr5 (90-251)||(11607532-11607705)
chr5 (190-251)||(39570153-39570214)
chr5 (90-183)||(33271694-33271787)
chr5 (24-88)||(36896667-36896731)
chr5 (23-89)||(26637593-26637659)
chr5 (196-251)||(38010730-38010785)
chr5 (197-251)||(9827788-9827842)
chr5 (196-251)||(13015381-13015436)
chr5 (196-251)||(13086753-13086808)
chr5 (97-159)||(10292976-10293038)
chr5 (22-89)||(10142251-10142318)
chr5 (196-251)||(13478161-13478216)
chr5 (295-334)||(24231710-24231749)
chr5 (196-251)||(29989962-29990017)
chr5 (24-78)||(6114588-6114641)
chr5 (23-89)||(10142803-10142869)
chr5 (109-155)||(16041069-16041115)
chr5 (193-235)||(33271630-33271672)
chr5 (90-159)||(38010611-38010680)
chr5 (115-159)||(25482742-25482786)
[»] chr4 (28 HSPs)
chr4 (7-89)||(23996411-23996493)
chr4 (90-251)||(12473704-12473877)
chr4 (90-251)||(12528113-12528286)
chr4 (115-250)||(33249397-33249544)
chr4 (100-251)||(22343337-22343500)
chr4 (90-251)||(55590482-55590644)
chr4 (106-251)||(21260794-21260951)
chr4 (23-89)||(24831063-24831129)
chr4 (97-251)||(35869576-35869742)
chr4 (87-151)||(35781021-35781085)
chr4 (23-89)||(42884977-42885043)
chr4 (24-89)||(13385759-13385824)
chr4 (23-85)||(4901284-4901346)
chr4 (190-250)||(52910159-52910219)
chr4 (97-159)||(1796654-1796716)
chr4 (43-89)||(15478210-15478256)
chr4 (190-250)||(34829193-34829253)
chr4 (46-89)||(15450508-15450551)
chr4 (292-327)||(40252766-40252801)
chr4 (26-89)||(42884892-42884955)
chr4 (196-247)||(49998486-49998537)
chr4 (196-251)||(52012778-52012833)
chr4 (23-89)||(51573426-51573492)
chr4 (97-159)||(51812018-51812080)
chr4 (300-333)||(32692920-32692953)
chr4 (24-89)||(40491793-40491858)
chr4 (190-251)||(51811914-51811975)
chr4 (298-330)||(24369515-24369547)
[»] chr2 (20 HSPs)
chr2 (91-251)||(34392080-34392252)
chr2 (89-191)||(23863800-23863902)
chr2 (24-83)||(9792245-9792304)
chr2 (23-89)||(10862978-10863044)
chr2 (196-248)||(7381695-7381747)
chr2 (23-89)||(36911287-36911353)
chr2 (190-251)||(21603959-21604020)
chr2 (190-251)||(37358031-37358092)
chr2 (99-159)||(4775739-4775799)
chr2 (88-191)||(4779657-4779760)
chr2 (90-159)||(25275620-25275689)
chr2 (89-153)||(21606149-21606213)
chr2 (90-153)||(37357915-37357978)
chr2 (23-89)||(13293814-13293879)
chr2 (90-191)||(41095784-41095885)
chr2 (201-251)||(4775634-4775684)
chr2 (287-333)||(35022712-35022757)
chr2 (300-333)||(13811144-13811177)
chr2 (28-89)||(34237798-34237859)
chr2 (298-327)||(42924384-42924413)
[»] chr3 (29 HSPs)
chr3 (97-251)||(44380254-44380420)
chr3 (10-89)||(30991657-30991737)
chr3 (117-251)||(47426350-47426496)
chr3 (7-89)||(93419-93502)
chr3 (92-247)||(33509684-33509851)
chr3 (190-249)||(32319475-32319534)
chr3 (23-89)||(27065299-27065365)
chr3 (88-183)||(37742805-37742900)
chr3 (196-250)||(50934501-50934555)
chr3 (190-251)||(10179873-10179934)
chr3 (10-88)||(9012118-9012194)
chr3 (196-251)||(47186175-47186230)
chr3 (23-89)||(4968459-4968525)
chr3 (90-147)||(19619214-19619271)
chr3 (99-159)||(35094652-35094712)
chr3 (38-85)||(27079894-27079941)
chr3 (190-249)||(39498779-39498838)
chr3 (23-89)||(25891330-25891396)
chr3 (190-251)||(10018676-10018737)
chr3 (24-89)||(25147687-25147752)
chr3 (196-251)||(31187186-31187241)
chr3 (196-251)||(42664673-42664728)
chr3 (303-333)||(48180273-48180303)
chr3 (110-159)||(25859019-25859068)
chr3 (300-333)||(30082964-30082997)
chr3 (90-159)||(47186280-47186349)
chr3 (288-333)||(48322163-48322207)
chr3 (43-76)||(49080858-49080891)
chr3 (190-238)||(37742738-37742786)
[»] chr6 (11 HSPs)
chr6 (97-250)||(1211849-1212014)
chr6 (90-251)||(5403874-5404047)
chr6 (197-251)||(11753167-11753221)
chr6 (23-85)||(33483539-33483601)
chr6 (22-89)||(24081678-24081746)
chr6 (88-136)||(10503255-10503303)
chr6 (192-250)||(11113557-11113615)
chr6 (300-333)||(7465582-7465615)
chr6 (90-159)||(32644836-32644904)
chr6 (303-333)||(2424394-2424424)
chr6 (23-89)||(31730449-31730515)
[»] scaffold0229 (1 HSPs)
scaffold0229 (90-250)||(13003-13176)
[»] chr7 (16 HSPs)
chr7 (90-159)||(48072491-48072560)
chr7 (90-251)||(48250154-48250329)
chr7 (104-251)||(35341536-35341695)
chr7 (90-191)||(32694568-32694669)
chr7 (23-89)||(2658541-2658607)
chr7 (108-159)||(40856949-40857000)
chr7 (23-89)||(9158780-9158846)
chr7 (99-140)||(31306875-31306916)
chr7 (22-89)||(1398163-1398231)
chr7 (23-85)||(7571056-7571118)
chr7 (23-85)||(7577471-7577533)
chr7 (23-85)||(7579833-7579895)
chr7 (23-89)||(23657357-23657423)
chr7 (300-333)||(35923474-35923507)
chr7 (190-251)||(40856392-40856453)
chr7 (115-159)||(22492409-22492453)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-89)||(452895-452958)
[»] scaffold0032 (2 HSPs)
scaffold0032 (196-251)||(34194-34249)
scaffold0032 (90-159)||(34297-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (90-191)||(11266-11367)
[»] scaffold0538 (2 HSPs)
scaffold0538 (22-89)||(4022-4089)
scaffold0538 (22-89)||(8487-8554)
[»] scaffold0193 (1 HSPs)
scaffold0193 (38-89)||(22898-22949)
[»] scaffold0263 (1 HSPs)
scaffold0263 (192-250)||(23094-23152)
[»] scaffold0778 (1 HSPs)
scaffold0778 (23-89)||(3284-3350)
[»] scaffold1444 (1 HSPs)
scaffold1444 (297-333)||(881-917)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 46435380 - 46435624
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaagggataggacttgtgtac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46435380 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaagggataggacttgtgtac 46435479  T
Q  107 cataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaaggtgacacactctaat 206  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||||||||       |||||||||||||||||||||||||||||| |||||||||    
T  46435480 cataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctataaaggtgacgcactctaat 46435579  T
Q  207 tggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46435580 tggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 90 - 359
Target Start/End: Complemental strand, 2569209 - 2568932
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| ||||||||| ||||||| ||||||  |||||| |||||||||||||||  |||||||||||||       |||||||||||||||||   |||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgggcttaataatcatctacaacatgctc 277  Q
                ||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgggctcaataatc---tacaacatgctc 2569014  T
Q  278 aaaaatgttattaaaataaggaaaatgttaacgagtgtctccgggacactctttaaccacgcttatgttgcaaaaactactc 359  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  2569013 aaaaatgttattaaaataagggaaatgttaacgagtgcctccgggacactctttaaccacacttatgttgcaaaaactactc 2568932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 251
Target Start/End: Original strand, 29119331 - 29119495
Alignment:
Q  99 ttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa--------- 189  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||             
T  29119331 ttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacaat 29119430  T
Q  190 ---aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
       ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29119431 gataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 27055806 - 27055723
Alignment:
Q  7 tgagatgaaagtgata-gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27055806 tgagatgaaagtgataagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 27055723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 35760418 - 35760501
Alignment:
Q  7 tgagatgaaagtgatag-tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35760418 tgagatgaaagtgatcggtgtaaattagtaagatggctgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 35760501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 29119266 - 29119326
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttata 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119266 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttata 29119326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 32676300 - 32676136
Alignment:
Q  99 ttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaag------- 191  Q
    |||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||  ||||       ||||||||||||||||| |||||||           
T  32676300 ttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagtaacatt 32676201  T
Q  192 -----gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
         |||   || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32676200 ggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 46835191 - 46835257
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46835191 gtgtaaattagtgagttgggtgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 46835257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 12458402 - 12458479
Alignment:
Q  9 agatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaa 88  Q
    ||||||||||||  |||||||||||| |||||  ||||||||||||||||||||||||||||||||||| | ||||||||    
T  12458402 agatgaaagtga--gtgtaaattagtgaggtgtgtgtaaacaatttgataaaatttataaaaatgagtgcaaataatcaa 12458479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 36018048 - 36017987
Alignment:
Q  27 aaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaa 88  Q
    |||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  36018048 aaattagtgaagtgggtgtaaacaatttgataaaatttataaaaacgagtgtatataatcaa 36017987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 3979743 - 3979692
Alignment:
Q  38 gtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  3979743 gtgggtgtaaacaatttgataaaatttataaaaatgagtgtatataaccaag 3979692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 27787426 - 27787489
Alignment:
Q  27 aaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaagg 90  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| | |||||| |||||||    
T  27787426 aaattagtgaggtgggtgtaaacaatttgataaaatttataaaaatgggcgtatatgatcaagg 27787489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 32708970 - 32709034
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||  || |||||||||||||||||||||||||||||  |||||||||||||    
T  32708970 gtgtaaattagtgaggtgagtgcaaacaatttgataaaatttataaaaatga--gtatataatcaag 32709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 7214521 - 7214578
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaa 247  Q
    ||||||||||||||||||| |||||  ||||||| ||| |||||||||||||||||||    
T  7214521 aggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 26214019 - 26213955
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatca 87  Q
    |||||||||||| | |||  ||||||||||||||||||| |||||||||| |||||| |||||||    
T  26214019 gtgtaaattagtgacgtgagtgtaaacaatttgataaaaattataaaaataagtgtaaataatca 26213955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 8809756 - 8809811
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  8809756 cacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 16679811 - 16679868
Alignment:
Q  192 gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    ||||||||  ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679811 gtgacacatcctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 25161370 - 25161309
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||| |||||| ||||||| |||| |||||||||||||  || ||||||||||||||||||    
T  25161370 aggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 35534578 - 35534507
Alignment:
Q  88 agggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||||| ||||||| ||||||||| ||||||  |||| |||||||   |||| |||||||||||||||||    
T  35534578 agggatagaacttgtgaaccataatgttatataatattggccaattaaggtgtgtcatgtggcacacccttt 35534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 35998426 - 35998357
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| || |||||||||| ||| |||||| ||||  |||||||  |||||||||||||||||| ||||    
T  35998426 ggatagcacctgtgtaccattatgttatataacattagccaattaagatgtgccatgtggcacacacttt 35998357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 3469176 - 3469258
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3469176 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 3469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 42906944 - 42906862
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42906944 tgagatgaaagtgatagtgtaaattagtaaggtggttgcaaacaatttgataaaatttataaaaatgagtgtatataatcaag 42906862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  89 gggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctata 188  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  189 a------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |            || || ||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 41179568 - 41179734
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa------- 189  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||       ||||| ||||||| ||| |||||           
T  41179568 acttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaaca 41179667  T
Q  190 -----aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
         |||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  41179668 tcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 11254026 - 11254127
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| | |||||||||||||||||||||| |||||| || |||||||||| || ||||||||||||||       ||||||||||||| ||| |||||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  190 ag 191  Q
    ||    
T  11254126 ag 11254127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 30806058 - 30805981
Alignment:
Q  10 gatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||  |||||||||||| || | | |||||| |||||||||||||||||||||||||||||| |||||||||    
T  30806058 gatgaaagtga--gtgtaaattagtgagataggtgtaaataatttgataaaatttataaaaatgagtgtaaataatcaag 30805981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 34347508 - 34347447
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataa 84  Q
    ||||||||||||||| ||  | |||||||||||||||||||||||||||| |||||||||||    
T  34347508 gtgtaaattagtaagatgagtttaaacaatttgataaaatttataaaaataagtgtatataa 34347447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 1271346 - 1271303
Alignment:
Q  43 tgtaaacaatttgataaaatttataaaaatgagtgtatataatc 86  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  1271346 tgtaaacaatttgataaaacttataaaaatgagtgtaaataatc 1271303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 32825947 - 32826005
Alignment:
Q  192 gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    |||||| |||||||||||||||| ||||| | ||||| ||| |||||||||||||||||    
T  32825947 gtgacatactctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 4708328 - 4708406
Alignment:
Q  113 ggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaag 191  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||||||       ||||||||||||| ||| |||||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaag 4708406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 12954870 - 12954835
Alignment:
Q  297 ggaaaatgttaacgagtgtctccgggacactcttta 332  Q
    |||||||||||||||||||||||| |||||||||||    
T  12954870 ggaaaatgttaacgagtgtctccgagacactcttta 12954835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 18168439 - 18168392
Alignment:
Q  197 acactctaattggccaattgtatataccattggtaccttaatggtaca 244  Q
    ||||||||||||  ||||  ||||||||||||||||||||||||||||    
T  18168439 acactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 18168549 - 18168490
Alignment:
Q  100 tgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||||||||||||||||||| ||| || ||||||| |||| || |||||||| |||||    
T  18168549 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatccttt 18168490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 18631996 - 18631949
Alignment:
Q  197 acactctaattggccaattgtatataccattggtaccttaatggtaca 244  Q
    ||||||||||||  ||||  ||||||||||||||||||||||||||||    
T  18631996 acactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 18632106 - 18632047
Alignment:
Q  100 tgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||||||||||||||||||| ||| || ||||||| |||| || |||||||| |||||    
T  18632106 tgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatccttt 18632047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 24733316 - 24733277
Alignment:
Q  294 taaggaaaatgttaacgagtgtctccgggacactctttaa 333  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  24733316 taagggaaatgttaacgagtgtctccggggcactctttaa 24733277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 1514837 - 1514803
Alignment:
Q  217 tatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||| ||||||||||||||||||||||||||||    
T  1514837 tatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 14149032 - 14148950
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14149032 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 14148950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 19357261 - 19357432
Alignment:
Q  91 gataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaa 190  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |||||       ||||||||||||||||| ||||||    
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  191 g------------gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |            ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 39058055 - 39058120
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39058055 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 39058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 18014398 - 18014481
Alignment:
Q  7 tgagatgaaagtgat-agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  18014398 tgagatgaaagtgatcagtgtaaattagtaagatggttgtaaacaatttgataaaatttataaaaataaatgtatataatcaag 18014481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 1826434 - 1826259
Alignment:
Q  88 agggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctat 187  Q
    |||||||  ||||||||| ||||||| ||||||||||||  |||||| ||||||||||||||||||  ||||       ||||||||||||||||||||     
T  1826434 agggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctac 1826335  T
Q  188 aaag------------gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||            ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  1826334 aaagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||       ||||||||||||| ||| |||||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacaca 246  Q
                ||||| |||||| ||||||| ||||  ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 11607532 - 11607705
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| ||||||||||||||||| |||||| ||||| |||||||||||||| |  ||||||||||||||       ||||||||||||| ||| |||||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
                ||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 39570153 - 39570214
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  39570153 aggtgacacactctaattggccaatggtatataccattgatactttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 33271787 - 33271694
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcat 183  Q
    |||||| |||| |||||||||||||||||||  |||||||||||||||||||||| ||||| || |||||       |||||||||||||||||    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcat 33271694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 36896731 - 36896667
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaa 88  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||| |||||    
T  36896731 tgtaaattagtgaggagggtgtaaacaatttgataaaatttataaaaatgagtgtgtattatcaa 36896667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 26637593 - 26637659
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||  ||||||||||||| |||||||||||||||||||| || |||||||||    
T  26637593 gtgtaaattagtgaggtgagtgtaaacaatttgttaaaatttataaaaatgagtataaataatcaag 26637659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 38010730 - 38010785
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||||||||||||    
T  38010730 cacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 9827842 - 9827788
Alignment:
Q  197 acactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||| | ||  ||||||||||||||||||||||||||||||||||||    
T  9827842 acactctaattgactaaaggtatataccattggtaccttaatggtacacaagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 13015436 - 13015381
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  13015436 cacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 13086808 - 13086753
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  13086808 cacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 10293038 - 10292976
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    ||||||||||||||||| |||||| ||||| |||||||   ||||||| ||||||||||||||    
T  10293038 acttgtgtaccataatgttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 10142318 - 10142251
Alignment:
Q  22 agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||| | |||||| |||||| ||||| |||||| |||||||||  |||||| |||||||||    
T  10142318 agtgtaaattattgaggtgggtgtaaaaaatttcataaaacttataaaaaatagtgtaaataatcaag 10142251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 13478161 - 13478216
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||||| ||||||||||||||||||||    
T  13478161 cacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 24231710 - 24231749
Alignment:
Q  295 aaggaaaatgttaacgagtgtctccgggacactctttaac 334  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  24231710 aaggaaaatgttaacgagtgcctccggaacactctttaac 24231749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 29990017 - 29989962
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||| ||||||||||||||||||||||    
T  29990017 cacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 6114641 - 6114588
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgt 78  Q
    |||||||||||||| | | ||||||||||||||||||| |||||||||| |||||    
T  6114641 tgtaaattagtaagataggtgtaaacaatttgataaaa-ttataaaaataagtgt 6114588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 10142803 - 10142869
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| ||||   || |||||||||||||||| |||||||||  |||||| |||||||||    
T  10142803 gtgtaaattagtgaggtatgtgcaaacaatttgataaaacttataaaaaatagtgtaaataatcaag 10142869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 16041069 - 16041115
Alignment:
Q  109 taatggtatatatcattgcccaattagaatgtgccatgtggcacacc 155  Q
    |||||||||||| ||||  ||||||||||||||||| ||||||||||    
T  16041069 taatggtatataacattagccaattagaatgtgccacgtggcacacc 16041115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 33271672 - 33271630
Alignment:
Q  193 tgacacactctaattggccaattgtatataccattggtacctt 235  Q
    ||||||||||||||||||||||  |||||| ||||||||||||    
T  33271672 tgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 38010611 - 38010680
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| ||||||||||||| ||| |||||| ||||  |||||||   ||||||||||||||||| ||||    
T  38010611 ggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 38010680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 25482742 - 25482786
Alignment:
Q  115 tatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| |||||||||||||| ||||||||  |||||||||||||    
T  25482742 tatataacattgcccaattaggatgtgccacatggcacacccttt 25482786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 23996493 - 23996411
Alignment:
Q  7 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996493 tgagatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 23996411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||       |||||||||||||||||||||||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
                ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||       |||||||||||||||||||||||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
                ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  115 tatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaag------------gtgacacactc 202  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||       ||||||||||||||||| |||||||            |||||||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  203 taattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 22343500 - 22343337
Alignment:
Q  100 tgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa---------- 189  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||||||||||| |||||       ||||||||||||||||| |||||              
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattg 22343401  T
Q  190 --aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
      || ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||    
T  22343400 atagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 55590644 - 55590482
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| ||||| |||||||||||||||||  |||||||||||||||||||| || |||||||| |||||       |||||||||||||| | |  |      
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaagtaacattgg 55590545  T
Q  190 -aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
     |||||||||||| ||||||  ||||  |||||||||||||||||||||||||||||||||||    
T  55590544 taggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 21260951 - 21260794
Alignment:
Q  106 ccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa------------aggt 193  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||       ||||||||||||| ||| |||||            ||||    
T  21260951 ccataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggt 21260852  T
Q  194 gacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||| | ||||||    
T  21260851 gacacactctaattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 24831063 - 24831129
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  24831063 gtgtaaattagtatggtgggtgtaaacaatttaatcaaatttataaaaatgagtgtatataatcaag 24831129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 35869576 - 35869742
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaag----- 191  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||| || ||||||||||||||       ||||||||||||| ||| |||| ||         
T  35869576 acttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaaca 35869675  T
Q  192 -------gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
           ||| |||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  35869676 ttggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 35781085 - 35781021
Alignment:
Q  87 aagggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggca 151  Q
    ||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  35781085 aagggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 42885043 - 42884977
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||  ||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  42885043 gtgtaaattagtgaggtgagtgtaaacaatttgataaaacttataaaaatgagcgtaaataatcaag 42884977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 13385824 - 13385759
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||| |||||  ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  13385824 tgtaaattagtgaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaag 13385759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 4901346 - 4901284
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    ||||||||||||||||||  |||||| |||||||||||| |||||||||||| |||| |||||    
T  4901346 gtgtaaattagtaaggtgaatgtaaataatttgataaaacttataaaaatgaatgtacataat 4901284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 52910159 - 52910219
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||| | ||||||||||||||    
T  52910159 aggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 1796716 - 1796654
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||||||| ||| |||| |||||    
T  1796716 acttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 15478210 - 15478256
Alignment:
Q  43 tgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||    
T  15478210 tgtaaagaattttataaaatttataaaaatgagtgtacataatcaag 15478256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 34829193 - 34829253
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    |||||||||||| |||||||||| |  |||||| ||||||||||||||| ||||| |||||    
T  34829193 aggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 15450508 - 15450551
Alignment:
Q  46 aaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||    
T  15450508 aaacaattttataaaatttataaaaatgtgtgtacataatcaag 15450551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 40252801 - 40252766
Alignment:
Q  292 aataaggaaaatgttaacgagtgtctccgggacact 327  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40252801 aataaggaaaatgttaacgagtgtctccggggcact 40252766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 42884955 - 42884892
Alignment:
Q  26 taaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||| |||||| ||||| ||||| ||||||| | ||||||||||||||| || ||||||    
T  42884955 taaattagtgaggtgggtgtaaccaattggataaaactgataaaaatgagtgtaaatcatcaag 42884892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 49998537 - 49998486
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaa 247  Q
    ||||| |||||||||||||  ||||||  |||||||||||||||||||||||    
T  49998537 cacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 52012833 - 52012778
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||| | ||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  52012833 cacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 51573492 - 51573426
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||| ||||||  ||||   |||| ||||||||||||||||| |||||||||    
T  51573492 gtgtaaattagtgaggtgggtgtaaattatttatcaaaagttataaaaatgagtgtaaataatcaag 51573426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 51812080 - 51812018
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| || |||||||||||||| ||||  |||||||||||||| ||  |||||||||||||    
T  51812080 acttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacacccttt 51812018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 32692920 - 32692953
Alignment:
Q  300 aaatgttaacgagtgtctccgggacactctttaa 333  Q
    ||||||||||||||| ||||||||||||||||||    
T  32692920 aaatgttaacgagtgcctccgggacactctttaa 32692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 40491793 - 40491858
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||| | |||||  |||||||||||| || ||||||||||||||| || || |||||||||    
T  40491793 tgtaaattaatgaggtgagtgtaaacaatttaattaaatttataaaaatgtgtataaataatcaag 40491858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 51811975 - 51811914
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||| || ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||    
T  51811975 aggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtgg 51811914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 24369547 - 24369515
Alignment:
Q  298 gaaaatgttaacgagtgtctccgggacactctt 330  Q
    |||||||||||||||||||||||||||| ||||    
T  24369547 gaaaatgttaacgagtgtctccgggacaatctt 24369515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 34392080 - 34392252
Alignment:
Q  91 gataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa- 189  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||       ||||||||||||||||| |||||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  190 -----------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
               ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 23863800 - 23863902
Alignment:
Q  89 gggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctata 188  Q
    ||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  189 aag 191  Q
    |||    
T  23863900 aag 23863902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 9792245 - 9792304
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatata 83  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9792245 tgtaaattagtgaggtgggtgtaaacaatttgataaaatttataaaaatgagtgtatata 9792304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 10862978 - 10863044
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  10862978 gtgtaaattagtgaggtgagtgtaaacaatttgataaaatttataaaaatgagtgtacataatcaag 10863044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 7381747 - 7381695
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaag 248  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7381747 cacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 36911353 - 36911287
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||| ||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  36911353 gtgtaaatcagtgaggtgagtgtaaaaaatttgataaaatttataaaaatgagtgtatataatcaag 36911287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 21604020 - 21603959
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21604020 aggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 37358031 - 37358092
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||||||||| | |||| ||||||| |||||||||||||||| |||||||||||    
T  37358031 aggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 4775799 - 4775739
Alignment:
Q  99 ttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||||||||||||| |||||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatccttt 4775739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 4779760 - 4779657
Alignment:
Q  88 agggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctat 187  Q
    |||||||  ||||||||| |||||||||||||| ||||| |||||||||||||| || ||| |||| |||||       |||||||||||||| || |||    
T  4779760 agggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttat 4779661  T
Q  188 aaag 191  Q
    ||||    
T  4779660 aaag 4779657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 25275620 - 25275689
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| |||| |||| |||||||||||||||||||| |||||||||||||  || |||||||| |||||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatccttt 25275689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  89 gggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcaca 153  Q
    ||||||| |||| |||| |||||||||||||| ||||| |||||||||||||| || ||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 37357915 - 37357978
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcaca 153  Q
    |||||| ||||||||| |||||| ||||||| ||||| |||||||||||||| || ||||||||    
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcaca 37357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 13293879 - 13293814
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| ||||   |||||| |||||||||||||||||||||| ||||||| |||||||||    
T  13293879 gtgtaaattagtgaggtatgtgtaaa-aatttgataaaatttataaaaaagagtgtaaataatcaag 13293814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 41095784 - 41095885
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| ||||  |||||||||||||||||| ||||| ||| ||||  |||||||||||||| ||| |||       | ||||||||||||||| |||||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  190 ag 191  Q
    ||    
T  41095884 ag 41095885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 4775684 - 4775634
Alignment:
Q  201 tctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||||||||||||  |||||| |||||||| |||||||||||| ||||||    
T  4775684 tctaattggccaataatatatatcattggtagcttaatggtacataagtgg 4775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 35022757 - 35022712
Alignment:
Q  287 attaaaataaggaaaatgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||||||||||||||| || || ||||||||||    
T  35022757 attaaaataaggaaaatgttaacgagtgtc-ccagggcactctttaa 35022712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 13811177 - 13811144
Alignment:
Q  300 aaatgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||| |||||||||||||||||||||||    
T  13811177 aaatgttaaccagtgtctccgggacactctttaa 13811144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 34237798 - 34237859
Alignment:
Q  28 aattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||||| |||||| ||||| |||||| |||||||||| | | || |||||||||    
T  34237798 aattagtaaggtgggtgtaaataatttaataaaacttataaaaataattataaataatcaag 34237859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 42924384 - 42924413
Alignment:
Q  298 gaaaatgttaacgagtgtctccgggacact 327  Q
    ||||||||||||||||||||||||||||||    
T  42924384 gaaaatgttaacgagtgtctccgggacact 42924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 44380420 - 44380254
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa------- 189  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||       ||||||||||||||||| |||||           
T  44380420 acttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaagtaata 44380321  T
Q  190 -----aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
         |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  44380320 ttgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 30991737 - 30991657
Alignment:
Q  10 gatgaaagtgat-agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30991737 gatgaaagtgatcagtgtaaattagtaagatggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 30991657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  117 tatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataaag------------gtgacacactcta 204  Q
    |||| ||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||            |||||||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  205 attggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 93502 - 93419
Alignment:
Q  7 tgagatgaaagtgat-agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  93502 tgagatgaaagtgatcagtgtaaattagtaagatggttgtaaataatttgataaaatttataaaaatgagtgtagataatcaag 93419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  92 ataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa-- 189  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||       || ||||||||||||||||||||      
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  190 ----------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaa 247  Q
              ||||| |||||||||||||| ||||  ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 32319475 - 32319534
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagt 249  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32319475 aggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 27065365 - 27065299
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  27065365 gtgtaaaatagtgaggtgagtgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 27065299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 37742900 - 37742805
Alignment:
Q  88 agggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcat 183  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||       |||||||||||||||||    
T  37742900 agggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcat 37742805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 50934555 - 50934501
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50934555 cacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 10179873 - 10179934
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  10179873 aggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9012118 - 9012194
Alignment:
Q  10 gatgaaagtgatagtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaa 88  Q
    |||||||||||  |||||||||||| |||||| |||||| ||||||| |||||||||||||| | ||||||||||||||    
T  9012118 gatgaaagtga--gtgtaaattagtgaggtggatgtaaataatttgacaaaatttataaaaaagtgtgtatataatcaa 9012194  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 47186230 - 47186175
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||||||||||||    
T  47186230 cacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 4968525 - 4968459
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| || ||| |||||||||||||| |||| || |||||||||||||| |||||||||    
T  4968525 gtgtaaattagtgagatgggtgtaaacaatttgaaaaaacttctaaaaatgagtgtaaataatcaag 4968459  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 19619271 - 19619214
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgt 147  Q
    |||||| || ||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtcatgt 19619214  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 35094712 - 35094652
Alignment:
Q  99 ttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    ||||||||||||||||||| |||||||| |||||||||||||| || ||| |||| |||||    
T  35094712 ttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatccttt 35094652  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 27079941 - 27079894
Alignment:
Q  38 gtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  27079941 gtggttgtaaacaatttgataaaacttataaaaataagtgtaaataat 27079894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 39498779 - 39498838
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagt 249  Q
    |||||||||||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498779 aggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 25891396 - 25891330
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||| || |||  ||||| ||||| ||||||||||||||||| |||||||||    
T  25891396 gtgtaaattagtgaggtgggtgcaaattatttgttaaaagttataaaaatgagtgtacataatcaag 25891330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 10018676 - 10018737
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||| |||||| | |||| ||||| ||||||| ||||||||| ||||||||||||||||||    
T  10018676 aggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 25147752 - 25147687
Alignment:
Q  24 tgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||| |||||| || |||  ||||| ||||| ||||||||||||||||| |||||||||    
T  25147752 tgtaaattagtgaggtgggtgcaaattatttgttaaaaattataaaaatgagtgtaaataatcaag 25147687  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 31187186 - 31187241
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| ||||||||||||||||||||| ||||||    
T  31187186 cacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 42664728 - 42664673
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||| ||||| ||||  |||||| | ||||||||||||||||||||||||||    
T  42664728 cacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 48180303 - 48180273
Alignment:
Q  303 tgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||||||||||||||||    
T  48180303 tgttaacgagtgtctccgggacactctttaa 48180273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 25859068 - 25859019
Alignment:
Q  110 aatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||| |||||| ||||| ||||||||| |||| |||||||||||||||||    
T  25859068 aatgttatataacattggccaattagagtgtgtcatgtggcacacccttt 25859019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 30082997 - 30082964
Alignment:
Q  300 aaatgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||| |||||||||||||||    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaa 30082964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 47186349 - 47186280
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| ||||||||||||| ||| |||||| ||||  |||||||   ||||||||||||||||| ||||    
T  47186349 ggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 47186280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 48322163 - 48322207
Alignment:
Q  288 ttaaaataaggaaaatgttaacgagtgtctccgggacactctttaa 333  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  48322163 ttaaactaaggaaaatgttaacgagtg-ctccggggcactctttaa 48322207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 49080858 - 49080891
Alignment:
Q  43 tgtaaacaatttgataaaatttataaaaatgagt 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  49080858 tgtaaacaatttgatcaaatttataaaaatgagt 49080891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 37742786 - 37742738
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaat 238  Q
    ||||| || |||||||||| |||||  ||||||||||||||||||||||    
T  37742786 aggtggcatactctaattgaccaatgatatataccattggtaccttaat 37742738  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 1211849 - 1212014
Alignment:
Q  97 acttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctat--------- 187  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||       |||||||||||||||||| ||             
T  1211849 acttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaaca 1211948  T
Q  188 ---aaaggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
       ||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  1211949 ttgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||  || ||||||       ||||||||||||| |||||||||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  190 ------------aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
                ||||| || ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 11753221 - 11753167
Alignment:
Q  197 acactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11753221 acactctaattggccgatggtatataccattggtaccttaatggtacacaagtgg 11753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 33483539 - 33483601
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  33483539 gtgtaaattagtgaggtgggtgtaaacaatttgataaaatttataaaatttagtgtatataat 33483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 24081746 - 24081678
Alignment:
Q  22 agtgtaaattagtaaggtggttgtaaacaa-tttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||| |||||  |||||| || |||||||||||| |||||||||||||||||||||||||    
T  24081746 agtgtaaattagtgaggtgagtgtaaaaaaatttgataaaattgataaaaatgagtgtatataatcaag 24081678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 10503255 - 10503303
Alignment:
Q  88 agggataggacttgtgtaccataatggtatatatcattgcccaattaga 136  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  10503255 agggatagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 11113615 - 11113557
Alignment:
Q  192 gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    |||||||||||| ||| | ||||  |||||| |||||||||||||||||||||||||||    
T  11113615 gtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 7465615 - 7465582
Alignment:
Q  300 aaatgttaacgagtgtctccgggacactctttaa 333  Q
    ||||||||||||||||||||||||||||||||||    
T  7465615 aaatgttaacgagtgtctccgggacactctttaa 7465582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 32644836 - 32644904
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| |||||||||| ||||||||||||| |||||  |||||||| |||  |||||||||||||||||    
T  32644836 ggatagcacttgtgtac-ataatggtatataccattgttcaattagattgtatcatgtggcacacccttt 32644904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 2424424 - 2424394
Alignment:
Q  303 tgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||||||||||||||||    
T  2424424 tgttaacgagtgtctccgggacactctttaa 2424394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 31730515 - 31730449
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||| |  |||  ||||| ||||| ||||||||||||||||| |||||||||    
T  31730515 gtgtaaattagtgaggtgggtacaaattatttgttaaaagttataaaaatgagtgtaaataatcaag 31730449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcac-accctttnnnnnnntatatcaaataaagcatctat- 187  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||       |||||||||||||||||| ||     
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  188 -----------aaaggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
               ||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 48072560 - 48072491
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgcca--tgtggcacaccctttnnnnnnntatatcaaataaagcatctat 187  Q
    |||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||  ||| ||| |||||||        ||||||||||||||||||||    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  188 aaag------------gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||||            ||| ||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 35341695 - 35341536
Alignment:
Q  104 taccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa------------ag 191  Q
    |||||||||| |||||||||||| |||||||||||||| || ||||||||||||||       ||||||||||||| ||| |||||            ||    
T  35341695 taccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtag 35341596  T
Q  192 gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    ||| |||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  35341595 gtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 32694568 - 32694669
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| |||||||||| ||||||||||||| ||||||| |||||||||||| || ||||||||||||||       |||||||||||||| || |||||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  190 ag 191  Q
    ||    
T  32694668 ag 32694669  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 2658541 - 2658607
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2658541 gtgtaaattagtgaggcgggggtaaacaatttgataaaatttattaaaatgagtgtatataatcaag 2658607  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  108 ataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 9158780 - 9158846
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||  ||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  9158780 gtgtaaattagtgaggtgagtgtaagcaatttgataaaagttataaaaatgggtgtatataatcaag 9158846  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 31306875 - 31306916
Alignment:
Q  99 ttgtgtaccataatggtatatatcattgcccaattagaatgt 140  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  31306875 ttgtgtaccataatgatatatatcattgtccaattagaatgt 31306916  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 1398231 - 1398163
Alignment:
Q  22 agtgtaaattagtaaggtggttgtaaacaatttg-ataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||| |||||| |||||||||| || | |||||| |||||||||||| || |||||||||    
T  1398231 agtgtaaattagtgaggtgggtgtaaacaatctgaacaaaattcataaaaatgagtttaaataatcaag 1398163  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 7571056 - 7571118
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    |||||||||| | |||||| |||| |  ||||| ||||||||||||||||||||||| |||||    
T  7571056 gtgtaaattattgaggtggatgtagattatttgttaaaatttataaaaatgagtgtaaataat 7571118  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 7577471 - 7577533
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    |||||||||| | |||||| |||| |  ||||| ||||||||||||||||||||||| |||||    
T  7577471 gtgtaaattattgaggtggatgtagattatttgttaaaatttataaaaatgagtgtaaataat 7577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 7579833 - 7579895
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataat 85  Q
    |||||||||| | |||||| |||| |  ||||| ||||||||||||||||||||||| |||||    
T  7579833 gtgtaaattattgaggtggatgtagattatttgttaaaatttataaaaatgagtgtaaataat 7579895  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 23657423 - 23657357
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||| ||||| |||| | ||||||  ||||| |||||||||| |||||||||||| |||||||||    
T  23657423 gtgtaagttagtgaggttggtgtaaaatatttgttaaaatttatcaaaatgagtgtaaataatcaag 23657357  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 35923474 - 35923507
Alignment:
Q  300 aaatgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||||||| |||||||||||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaa 35923507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 40856453 - 40856392
Alignment:
Q  190 aggtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856453 aggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 22492453 - 22492409
Alignment:
Q  115 tatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| ||||||||||| || |||||||| ||||||||||||||    
T  22492453 tatataacattgcccaatcaggatgtgccacgtggcacacccttt 22492409  T

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Target: scaffold0002 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 452895 - 452958
Alignment:
Q  26 taaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  452895 taaattagtgaggtgggtgtaaacaatttgataaaatttataaaaatgagtttatataatcaag 452958  T

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Target: scaffold0032 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 34249 - 34194
Alignment:
Q  196 cacactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 251  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34249 cacactctaattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 34365 - 34297
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacacccttt 159  Q
    |||||| | ||||||||||||| |||||||| ||||  |||||||||||||| || ||| ||||||||||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacacccttt 34297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 11367 - 11266
Alignment:
Q  90 ggataggacttgtgtaccataatggtatatatcattgcccaattagaatgtgccatgtggcacaccctttnnnnnnntatatcaaataaagcatctataa 189  Q
    |||||| | |||||||||||||||||||||| |||||| || |||||||||| || ||||||||||||||       ||||||||||||| ||| |||||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  190 ag 191  Q
    ||    
T  11267 ag 11266  T

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Target: scaffold0538 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 4022 - 4089
Alignment:
Q  22 agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||| |||||  ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  4022 agtgtaaattagtgaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaag 4089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 8487 - 8554
Alignment:
Q  22 agtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    ||||||||||||| |||||  ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  8487 agtgtaaattagtgaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaag 8554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 22949 - 22898
Alignment:
Q  38 gtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22949 gtggatgtaaacaatttgataaaatttataaaaatgattgtatataatcaag 22898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 23152 - 23094
Alignment:
Q  192 gtgacacactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 250  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23152 gtgacagaccctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 3350 - 3284
Alignment:
Q  23 gtgtaaattagtaaggtggttgtaaacaatttgataaaatttataaaaatgagtgtatataatcaag 89  Q
    |||||||||||| |||||| || |||  ||||| ||||| ||||||||||||||||| |||||||||    
T  3350 gtgtaaattagtgaggtgggtgcaaattatttgttaaaaattataaaaatgagtgtaaataatcaag 3284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 881 - 917
Alignment:
Q  297 ggaaaatgttaacgagtgtctccgggacactctttaa 333  Q
    |||||||||||||||||||||||||| ||||||||||    
T  881 ggaaaatgttaacgagtgtctccggggcactctttaa 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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