View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_36 (Length: 328)
Name: NF10957_low_36
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 31821915 - 31822240
Alignment:
| Q |
1 |
gttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctccctattttcagaattgaggtttgtcttctttaactttttctctttg |
100 |
Q |
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| T |
31821915 |
gttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttg |
31822014 |
T |
|
| Q |
101 |
tggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822015 |
tggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacacta |
31822114 |
T |
|
| Q |
201 |
aggttaaaaaagaatgaaaatacaaaacctgatcagtgttgctattagaccacaattgatggactaattgatgattattt-atgtttgtttgatctataa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
31822115 |
aggttaaaaaagaatgaaaatacaaaacctgatcagtgttgctattagaccacaattgatggactgattgatgattatttcatgtttgtttgatctataa |
31822214 |
T |
|
| Q |
300 |
atcacttttgaaaaaccgaacttcat |
325 |
Q |
| |
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| | |||||||||||||||||||||| |
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| T |
31822215 |
agcccttttgaaaaaccgaacttcat |
31822240 |
T |
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