View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_41 (Length: 306)
Name: NF10957_low_41
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 52858544 - 52858828
Alignment:
| Q |
1 |
caaccatttcatcatacttataagaagttgaagtccctaattgcatgtttagtatcacagttgattgataaaatcacgatgataccgtaattctgagagc |
100 |
Q |
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| T |
52858544 |
caaccatttcatcatacttataagaagttgtggtccctaattgcatgtttagtatcacatttgattgataaaatcacgatgataccttgattctgagagc |
52858643 |
T |
|
| Q |
101 |
ccttaattttatttgttttccattaaaattaattaatcattataggaaattggtggcccctaagtgtatgcttagtatcaagatggattgataaaatcac |
200 |
Q |
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| T |
52858644 |
ccttaattttatttgttttccattaaaattaattaatcattataggaaattggtggcccctaagtgtatgcttagtatcaggatggattgataaaatccc |
52858743 |
T |
|
| Q |
201 |
gatcaatcgtgactataacacagtaataataaacatgcactaaccagaccttccttgtcatcgtggcccatcatacaatagacga |
285 |
Q |
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| T |
52858744 |
gatcaatcgtgactataacacagtaataataaacatgcactagccagaccttccttgtcatcgtggcccatcatccaatagacga |
52858828 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 42687009 - 42686973
Alignment:
| Q |
42 |
tgcatgtttagtatcacagttgattgataaaatcacg |
78 |
Q |
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| T |
42687009 |
tgcatgtttagtatcacagttgattgctaatatcacg |
42686973 |
T |
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