View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_42 (Length: 306)
Name: NF10957_low_42
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_42 |
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| [»] scaffold1052 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 6182465 - 6182760
Alignment:
| Q |
8 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182465 |
ttgagttttaattaattcaatttgaactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
6182564 |
T |
|
| Q |
107 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
205 |
Q |
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||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182565 |
gtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcaccacg |
6182664 |
T |
|
| Q |
206 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatctctct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
6182665 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctcttgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctct |
6182760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1052 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold1052
Description:
Target: scaffold1052; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 706 - 1004
Alignment:
| Q |
8 |
ttgagttttaattaattcaatttggactttcaacaggtgacaa----aactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttg |
103 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
706 |
ttgagatttaattaattcaatttggactttcaacaggtgacaacagaaactatgataaaatcaagaaataggacacacaaattcattgttgttgttgtta |
805 |
T |
|
| Q |
104 |
aaggtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcacc |
202 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
806 |
gaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatggattcgaaacagcgttgtacccatgtccatgtcacc |
905 |
T |
|
| Q |
203 |
acgacaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatctctct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
906 |
acgacaacctcacaacggtgaaatcctcttcgactatgccatcgctctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctct |
1004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 5101200 - 5101493
Alignment:
| Q |
8 |
ttgagttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
106 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5101200 |
ttgagttttaattaattcaatttggactttcaacaggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaag |
5101299 |
T |
|
| Q |
107 |
gtaaagtggaaaaggaatatttgttttaaaacttgtttt-ttggtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacg |
205 |
Q |
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|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
5101300 |
gtaaagtggaaaaggaatgt--gttttaaaacttgtttttttggtttgatgttggaatctggattcggaacagcattgtacccatgtccatgtcaccacg |
5101397 |
T |
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| Q |
206 |
acaacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatctctct |
301 |
Q |
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| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
5101398 |
ataacctcacaacggtgaaatcctctttgactatgtcatcgttctcgtcttcatcctcgtcactccagtgttccgtttgcttctcttcatttctct |
5101493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 32356241 - 32356534
Alignment:
| Q |
11 |
agttttaattaattcaatttggactttcaacaggtgaca-aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
109 |
Q |
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|
||||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356241 |
agttttaattaattcaatttgaacttttaacgggtgacagaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
32356340 |
T |
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| Q |
110 |
aagtggaaaaggaatatttgttttaaaacttgttttttg--gtttgatgttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
207 |
Q |
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|||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32356341 |
gagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatctggattcgaaacagcgttgtacccatgtccatgtcaccacgac |
32356440 |
T |
|
| Q |
208 |
aacctcacaacggtgaaatcctcttcgactatgtcatcgctctcgtcttcatcctcgtcacttcagtgttccgtttgcttctcttcatctctct |
301 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
32356441 |
aacctcacaacggtgaaatcctcttcgactatgtcttcgctcttgtcttcatcctcgtcactccagtgttctgtttgcttctcttcatttctct |
32356534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 20574 - 20646
Alignment:
| Q |
50 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaagga |
122 |
Q |
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|||||||| |||||| |||||||||||||||||| | ||||||||||||||||| | ||||| |||||||||| |
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| T |
20574 |
aaactatgataaaattaacaaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga |
20646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 10200348 - 10200279
Alignment:
| Q |
50 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaa |
119 |
Q |
| |
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|||||||| |||||| |||||||||||||||||| | ||||| ||||||||||| | ||||| ||||||| |
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| T |
10200348 |
aaactatgataaaattaacaaataggacacacaattccattgctgttgttgttggaagtaaaatggaaaa |
10200279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 325876 - 325832
Alignment:
| Q |
50 |
aaactatggtaaaatcaacaaataggacacacaaattcattgttg |
94 |
Q |
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|||||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
325876 |
aaactatgataaaattaacaaataggacacacaatttcattgttg |
325832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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