View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_low_45 (Length: 297)

Name: NF10957_low_45
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_low_45
NF10957_low_45
[»] chr3 (2 HSPs)
chr3 (19-292)||(38213975-38214248)
chr3 (19-292)||(38218194-38218467)
[»] chr8 (3 HSPs)
chr8 (53-292)||(42991291-42991528)
chr8 (53-246)||(35017979-35018172)
chr8 (148-189)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (101-230)||(37188902-37189031)
chr7 (158-219)||(32715057-32715118)
chr7 (158-219)||(32709835-32709896)
chr7 (158-219)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (158-222)||(10411404-10411468)
chr6 (158-222)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (100-216)||(53492975-53493091)
chr4 (101-216)||(53499268-53499383)
chr4 (117-190)||(53495378-53495451)
chr4 (122-208)||(53488672-53488758)
chr4 (119-189)||(53502408-53502478)
chr4 (101-216)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (122-213)||(16942656-16942747)
chr2 (122-213)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (148-189)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 38214248 - 38213975
Alignment:
Q  19 ataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattcca 118  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214248 ataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattcca 38214149  T
Q  119 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214148 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcac 38214049  T
Q  219 cctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgcttct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38214048 cctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattct 38213975  T

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Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 38218467 - 38218194
Alignment:
Q  19 ataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattcca 118  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218467 ataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattcca 38218368  T
Q  119 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218367 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcac 38218268  T
Q  219 cctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgcttct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38218267 cctttacagcttactaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattct 38218194  T

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Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 42991291 - 42991528
Alignment:
Q  53 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 152  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  153 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 252  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 42991490  T
Q  253 tgagttatcttctgtctcttccacttccttctctgcttct 292  Q
    ||| |||||  |||||||||||||||||||||||| ||||    
T  42991491 tgaattatc--ctgtctcttccacttccttctctgattct 42991528  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  53 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 152  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  153 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaa 246  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  148 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 189  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  101 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 200  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  201 ctgattggtccaaagcaccctttacagctt 230  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  158 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 219  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  158 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 219  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  158 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 219  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  158 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 222  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  158 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 222  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  100 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 199  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  200 actgattggtccaaagc 216  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  101 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 200  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  201 ctgattggtccaaagc 216  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  117 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 190  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  122 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 208  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  119 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 189  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  101 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 200  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  201 ctgattggtccaaagc 216  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  122 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 213  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  122 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 213  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  148 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 189  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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